C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002WU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030789-ENSDARG00000040678 CGP 7955 9:39366775-39420447
GeneTranscriptPositionBiotype
ENSDARG00000030789 (ddx18)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 		ENSDART00000048753 (ddx18-001) 39366775-39404529 protein_coding
ENSDARG00000040678 (ccdc93)
coiled-coil domain containing 93 		ENSDART00000059574 (ccdc93-001) 39405761-39420447 protein_coding
CIL_0002WU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088205-ENSG00000125633 CGP 9606 2:117814650-118014133
GeneTranscriptPositionBiotype
ENSG00000088205 (DDX18)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 		ENST00000263239 (DDX18-001) 117814650-117832379 protein_coding
ENST00000415038 (DDX18-003) 117822147-117828965 protein_coding
ENST00000461443 (DDX18-004) 117824997-117825983 retained_intron
ENST00000474694 (DDX18-006) 117815058-117824599 processed_transcript
ENST00000476149 (DDX18-005) 117824337-117832370 retained_intron
ENST00000489933 (DDX18-002) 117821976-117822780 retained_intron
ENSG00000125633 (CCDC93)
coiled-coil domain containing 93 		ENST00000319432 (CCDC93-010) 117915478-118014133 protein_coding
ENST00000376300 (CCDC93-001) 117915478-118014133 protein_coding
ENST00000437999 (CCDC93-005) 117920305-117948179 nonsense_mediated_decay
ENST00000460781 (CCDC93-003) 117951489-117996289 processed_transcript
ENST00000466171 (CCDC93-006) 117936512-117944080 retained_intron
ENST00000470650 (CCDC93-007) 117935498-117936901 retained_intron
ENST00000474006 (CCDC93-002) 117995452-118001137 retained_intron
ENST00000474546 (CCDC93-008) 117931043-117935838 retained_intron
ENST00000488908 (CCDC93-004) 117948033-117952412 retained_intron
ENSG00000236255 (AC009404.2)
 ENST00000420330 (AC009404.2-003) 117833937-117841658 lincRNA
ENST00000439955 (AC009404.2-002) 117836350-117838204 lincRNA
ENST00000445332 (AC009404.2-001) 117837744-117839389 lincRNA
ENSG00000272895 (RP11-98C1.2)
 ENST00000591103 (RP11-98C1.2-001) 117998745-117999480 antisense
ENSG00000273185 (RP11-98C1.1)
 ENST00000588733 (RP11-98C1.1-001) 117997941-118000248 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WU_0001ENSDARG00000030789ENSDART00000048753ENSDARG00000040678ENSDART00000059574CIL_0002WU_0002ENSG00000088205ENST00000263239ENST00000415038ENST00000461443ENST00000474694ENST00000476149ENST00000489933ENSG00000125633ENST00000319432ENST00000376300ENST00000437999ENST00000460781ENST00000466171ENST00000470650ENST00000474006ENST00000474546ENST00000488908ENSG00000236255ENST00000420330ENST00000439955ENST00000445332ENSG00000272895ENST00000591103ENSG00000273185ENST00000588733
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WU_0001ENSDARG00000030789ENSDART00000048753ENSDARG00000040678ENSDART00000059574CIL_0002WU_0002ENSG00000088205ENST00000263239ENSG00000125633ENST00000319432ENST00000376300ENST00000474546ENSG00000236255ENST00000420330ENST00000439955ENST00000445332ENSG00000272895ENST00000591103ENSG00000273185ENST00000588733
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030789 ENSDART00000048753 N/A N/A N/A 5.348±2.33 N/A N/A 5.191±5.12 47.018±0.00 9.212±0.00 N/A 4.275±0.00 N/A N/A N/A
ENSDARG00000040678 ENSDART00000059574 N/A N/A N/A 11.151±2.81 N/A N/A 4.565±2.01 5.525±2.62 0.346±0.00 N/A 1.856±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088205 ENST00000263239 9.027±0.00 16.362±0.00 0.861±0.00 4.535±0.17 7.686±0.91 8.387±2.44 3.324±2.25 6.677±4.35 4.478±3.09 6.646±0.36 2.719±1.18 22.629±12.56 11.010±4.26 15.130±5.34
ENST00000415038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125633 ENST00000319432 N/A N/A N/A N/A N/A 1.217±0.00 0.623±0.00 2.133±0.00 0.494±0.00 N/A 0.729±0.00 N/A N/A N/A
ENST00000376300 2.720±0.00 2.826±0.00 1.522±0.00 1.909±0.04 2.016±0.18 1.884±0.66 11.021±0.00 0.903±0.00 1.259±0.47 3.094±0.07 2.210±0.00 3.553±2.74 2.061±0.70 6.037±3.02
ENST00000437999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.989±0.00 14.312±0.00 49.015±0.00
ENST00000488908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236255 ENST00000420330 0.069±0.00 0.249±0.00 0.052±0.00 0.111±0.01 0.041±0.00 0.123±0.04 0.046±0.00 0.128±0.07 0.031±0.00 0.316±0.01 0.118±0.08 0.056±0.03 0.032±0.02 0.211±0.00
ENST00000439955 0.084±0.00 0.675±0.00 0.114±0.00 0.363±0.17 0.079±0.00 0.207±0.00 0.248±0.00 0.686±0.10 N/A 0.392±0.01 0.322±0.00 0.501±0.03 0.181±0.05 1.117±0.90
ENST00000445332 N/A N/A N/A N/A 0.755±0.43 0.775±0.00 0.097±0.00 N/A N/A 0.492±0.00 N/A N/A N/A 0.513±0.00
ENSG00000272895 ENST00000591103 N/A N/A N/A 0.030±0.00 0.126±0.00 0.623±0.00 0.048±0.02 0.069±0.00 N/A 0.461±0.00 N/A 0.125±0.12 0.043±0.00 0.035±0.01
ENSG00000273185 ENST00000588733 0.056±0.00 0.028±0.00 0.061±0.00 N/A N/A 0.369±0.00 0.115±0.09 N/A N/A N/A N/A N/A N/A 0.406±0.20

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