C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263239 DDX18-001 ENSG00000088205 9606 + 2:117814650-117832379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263239 9.027±0.00 16.362±0.00 0.861±0.00 4.535±0.17 7.686±0.91 8.387±2.44 3.324±2.25 6.677±4.35 4.478±3.09 6.646±0.36 2.719±1.18 22.629±12.56 11.010±4.26 15.130±5.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WU CIL_0002WU_0002 CGP 2:117814650-118014133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001724 Ddx18-001 protein_coding Mus_musculus 0 1725
ENSMUST00000062429 Gm16433-201 pseudogene Mus_musculus 0 1720
ENSMUST00000186797 RP23-192E10.1-001 processed_pseudogene Mus_musculus 0 1343
ENSMUST00000134417 Ddx18-004 protein_coding Mus_musculus 0 453
ENSMUST00000187254 RP23-32C18.3-001 processed_pseudogene Mus_musculus 0 396

Loading