C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC62 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029256 Sec62-201 ENSMUSG00000027706 10090 + 3:30792876-30821263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029256 15.726±0.43 14.750±1.22 25.157±0.00 20.227±0.87 10.813±2.67 7.661±1.82 7.061±1.79 34.074±5.48 15.863±5.97 17.936±0.89 10.930±0.98 16.766±7.89 24.826±7.19 8.732±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049M CIL_00049M_0003 CGP 3:30746293-30821263
CIL_0002XU CIL_0002XU_0002 CGP 3:30792876-30897192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0006620 ISO posttranslational protein targeting to membrane
GO:0008565 IEA protein transporter activity
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337002 SEC62-001 protein_coding Homo_sapiens 0 1997
ENST00000460513 SEC62-004 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000461933 SEC62-011 processed_transcript Homo_sapiens 6e-36 154
ENST00000469515 SEC62-005 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000470355 SEC62-010 processed_transcript Homo_sapiens 0 464
ENST00000480708 SEC62-002 protein_coding Homo_sapiens 0 1685
ENST00000481435 SEC62-007 retained_intron Homo_sapiens 0 894
ENST00000487736 SEC62-008 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000497277 SEC62-012 retained_intron Homo_sapiens 0 523

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