C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000338_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061400-ENSDARG00000055305 CGP 7955 13:25793721-25856646
GeneTranscriptPositionBiotype
ENSDARG00000055305 (ret)
ret proto-oncogene receptor tyrosine kinase
ENSDART00000077627 (ret-001) 25808446-25856646 protein_coding
ENSDART00000139237 (ret-002) 25808446-25856646 protein_coding
ENSDARG00000061400 (csgalnact2)
chondroitin sulfate N-acetylgalactosaminyltransferase 2
ENSDART00000087533 (csgalnact2-001) 25793721-25805193 protein_coding
CIL_000338_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042042-ENSMUSG00000030110 CGP 10090 6:118107452-118197744
GeneTranscriptPositionBiotype
ENSMUSG00000030110 (Ret)
ret proto-oncogene
ENSMUST00000032201 (Ret-201) 118151748-118197744 protein_coding
ENSMUST00000088790 (Ret-202) 118151748-118197744 protein_coding
ENSMUSG00000042042 (Csgalnact2)
chondroitin sulfate N-acetylgalactosaminyltransferase 2
ENSMUST00000049344 (Csgalnact2-001) 118107452-118139140 protein_coding
ENSMUST00000125531 (Csgalnact2-002) 118107452-118129620 retained_intron
ENSMUST00000136265 (Csgalnact2-003) 118109336-118126406 protein_coding
ENSMUSG00000077787 (Gm23908)
predicted gene, 23908
ENSMUST00000104599 (Gm23908-201) 118111914-118112045 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000338_0001ENSDARG00000055305ENSDART00000077627ENSDART00000139237ENSDARG00000061400ENSDART00000087533CIL_000338_0002ENSMUSG00000030110ENSMUST00000032201ENSMUST00000088790ENSMUSG00000042042ENSMUST00000049344ENSMUST00000125531ENSMUST00000136265ENSMUSG00000077787ENSMUST00000104599
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000338_0001ENSDARG00000055305ENSDART00000077627ENSDART00000139237ENSDARG00000061400ENSDART00000087533CIL_000338_0002ENSMUSG00000030110ENSMUST00000032201ENSMUST00000088790ENSMUSG00000042042ENSMUST00000049344ENSMUST00000125531ENSMUSG00000077787ENSMUST00000104599
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055305 ENSDART00000077627 N/A N/A N/A 1.308±0.36 N/A N/A 0.072±0.04 0.446±0.47 0.022±0.00 N/A 0.022±0.00 N/A N/A N/A
ENSDART00000139237 N/A N/A N/A 1.271±0.13 N/A N/A 0.051±0.00 0.398±0.13 N/A N/A 0.137±0.00 N/A N/A N/A
ENSDARG00000061400 ENSDART00000087533 N/A N/A N/A 7.540±3.95 N/A N/A 3.197±0.69 4.511±2.18 0.535±0.00 N/A 1.142±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030110 ENSMUST00000032201 1.332±1.08 0.416±0.11 0.141±0.02 0.620±0.00 0.463±0.09 1.210±0.28 0.350±0.09 0.097±0.04 0.011±0.01 N/A 0.231±0.08 1.158±0.58 0.103±0.07 0.064±0.03
ENSMUST00000088790 4.394±3.02 0.333±0.15 0.516±0.04 1.532±0.74 0.675±0.20 1.803±0.21 0.796±0.19 0.164±0.03 0.023±0.02 0.524±0.04 0.541±0.12 0.905±0.48 0.183±0.12 0.196±0.10
ENSMUSG00000042042 ENSMUST00000049344 3.736±1.61 2.575±0.20 8.352±1.18 1.464±0.04 3.516±0.44 1.015±0.37 2.494±0.11 3.461±0.56 2.522±1.41 12.651±0.66 7.320±1.52 4.538±2.10 2.720±0.58 0.650±0.13
ENSMUST00000125531 N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENSMUST00000136265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077787 ENSMUST00000104599 N/A 565.623±0.00 N/A 10.748±0.00 N/A N/A N/A N/A 6.320±1.39 N/A 3.278±0.00 22.550±0.40 11.806±2.62 N/A

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