C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ret proto-oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088790 Ret-202 ENSMUSG00000030110 10090 - 6:118151748-118197744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088790 4.394±3.02 0.333±0.15 0.516±0.04 1.532±0.74 0.675±0.20 1.803±0.21 0.796±0.19 0.164±0.03 0.023±0.02 0.524±0.04 0.541±0.12 0.905±0.48 0.183±0.12 0.196±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000338 CIL_000338_0002 CGP 6:118107452-118197744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IGI MAPK cascade
GO:0001657 IMP ureteric bud development
GO:0001755 IMP neural crest cell migration
GO:0001838 IDA embryonic epithelial tube formation
GO:0004714 TAS transmembrane receptor protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007158 IDA neuron cell-cell adhesion
GO:0007169 IGI transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007399 IMP nervous system development
GO:0009653 TAS anatomical structure morphogenesis
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0030182 IMP neuron differentiation
GO:0035799 IMP ureter maturation
GO:0042551 IMP neuron maturation
GO:0043235 ISO receptor complex
GO:0045793 IMP positive regulation of cell size
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0048265 IMP response to pain
GO:0048484 IMP enteric nervous system development
GO:0050770 IMP regulation of axonogenesis
GO:0061146 IMP Peyer's patch morphogenesis
GO:0072300 IMP positive regulation of metanephric glomerulus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340058 RET-002 protein_coding Homo_sapiens 0 3081
ENST00000355710 RET-001 protein_coding Homo_sapiens 0 2824
ENST00000498820 RET-003 protein_coding Homo_sapiens 0 388
ENST00000615310 RET-201 protein_coding Homo_sapiens 0 1031

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