C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00035Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179055-ENSG00000136783 CGP 9606 9:104694422-104760122
GeneTranscriptPositionBiotype
ENSG00000136783 (NIPSNAP3A)
nipsnap homolog 3A (C. elegans)
ENST00000374767 (NIPSNAP3A-001) 104747688-104760122 protein_coding
ENST00000471001 (NIPSNAP3A-002) 104753599-104759130 processed_transcript
ENSG00000179055 (OR13D1)
olfactory receptor, family 13, subfamily D, member 1
ENST00000318763 (OR13D1-001) 104694422-104695462 protein_coding
ENSG00000188712 (OR13D3P)
olfactory receptor, family 13, subfamily D, member 3 pseudogene
ENST00000412501 (OR13D3P-001) 104722335-104723271 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00035Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000070983-ENSMUSG00000015242 CGP 10090 4:52970623-53001162
GeneTranscriptPositionBiotype
ENSMUSG00000015242 (Nipsnap3a)
nipsnap homolog 3A (C. elegans)
ENSMUST00000015386 (Nipsnap3a-003) 52989272-53000847 nonsense_mediated_decay
ENSMUST00000107666 (Nipsnap3a-001) 52989418-53001162 protein_coding
ENSMUST00000123780 (Nipsnap3a-002) 53000264-53000846 retained_intron
ENSMUST00000188045 (Nipsnap3a-201) 52989284-53000854 protein_coding
ENSMUSG00000070983 (Olfr270)
olfactory receptor 270
ENSMUST00000095084 (Olfr270-001) 52970623-52971567 protein_coding
ENSMUST00000172257 (Olfr270-201) 52970629-52971567 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00035Q_0001ENSG00000136783ENST00000374767ENST00000471001ENSG00000179055ENST00000318763ENSG00000188712ENST00000412501CIL_00035Q_0002ENSMUSG00000015242ENSMUST00000015386ENSMUST00000107666ENSMUST00000123780ENSMUST00000188045ENSMUSG00000070983ENSMUST00000095084ENSMUST00000172257
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00035Q_0001ENSG00000136783ENST00000374767ENST00000471001ENSG00000179055ENST00000318763ENSG00000188712ENST00000412501CIL_00035Q_0002ENSMUSG00000015242ENSMUST00000015386ENSMUST00000123780ENSMUST00000188045ENSMUSG00000070983ENSMUST00000095084ENSMUST00000172257
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136783 ENST00000374767 6.108±0.00 4.724±0.00 0.743±0.00 6.091±1.63 8.576±5.05 4.768±0.29 3.708±1.71 9.583±3.85 4.060±0.35 4.918±2.28 1.240±0.81 7.502±2.20 9.421±3.10 10.180±1.05
ENST00000471001 N/A N/A 1.327±0.00 1.140±0.00 1.311±0.00 N/A N/A N/A N/A 0.705±0.00 N/A N/A N/A N/A
ENSG00000179055 ENST00000318763 N/A N/A 0.306±0.00 N/A 0.737±0.00 N/A 0.515±0.00 0.088±0.00 0.763±0.00 N/A N/A N/A N/A 0.324±0.00
ENSG00000188712 ENST00000412501 N/A N/A N/A 0.311±0.28 0.013±0.00 0.141±0.12 0.235±0.00 0.693±0.64 N/A 0.836±0.00 N/A 0.135±0.07 N/A 0.133±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015242 ENSMUST00000015386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.497±26.95
ENSMUST00000107666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123780 N/A N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.446±0.00
ENSMUSG00000070983 ENSMUST00000095084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00
ENSMUST00000172257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.03

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