C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00039H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000267534-ENSG00000105364 CGP 9606 19:10223844-10260045
GeneTranscriptPositionBiotype
ENSG00000105364 (MRPL4)
mitochondrial ribosomal protein L4 		ENST00000253099 (MRPL4-001) 10251967-10260045 protein_coding
ENST00000307422 (MRPL4-201) 10251964-10260043 protein_coding
ENST00000393733 (MRPL4-003) 10252227-10260025 protein_coding
ENST00000588502 (MRPL4-010) 10252276-10258623 protein_coding
ENST00000588963 (MRPL4-005) 10252305-10253029 retained_intron
ENST00000590150 (MRPL4-009) 10251998-10258234 protein_coding
ENST00000590669 (MRPL4-002) 10252010-10259125 protein_coding
ENST00000590702 (MRPL4-008) 10254620-10259042 protein_coding
ENST00000591054 (MRPL4-007) 10251944-10258667 nonsense_mediated_decay
ENST00000592071 (MRPL4-004) 10252258-10255717 retained_intron
ENST00000592514 (MRPL4-006) 10251901-10259778 protein_coding
ENSG00000130816 (DNMT1)
DNA (cytosine-5-)-methyltransferase 1 		ENST00000340748 (DNMT1-001) 10133346-10195135 protein_coding
ENST00000359526 (DNMT1-002) 10133540-10195079 protein_coding
ENST00000540357 (DNMT1-201) 10133347-10195135 protein_coding
ENST00000585843 (DNMT1-018) 10154664-10160263 retained_intron
ENST00000585920 (DNMT1-017) 10160207-10162983 retained_intron
ENST00000586086 (DNMT1-014) 10180463-10184559 processed_transcript
ENST00000586588 (DNMT1-004) 10133345-10144754 retained_intron
ENST00000586667 (DNMT1-020) 10148925-10151697 retained_intron
ENST00000586799 (DNMT1-019) 10149948-10154977 nonsense_mediated_decay
ENST00000586800 (DNMT1-010) 10180355-10201197 protein_coding
ENST00000586988 (DNMT1-015) 10168330-10194904 nonsense_mediated_decay
ENST00000587197 (DNMT1-026) 10137888-10140195 retained_intron
ENST00000587604 (DNMT1-023) 10140529-10142074 retained_intron
ENST00000588118 (DNMT1-009) 10175540-10201192 protein_coding
ENST00000588913 (DNMT1-008) 10133367-10140130 nonsense_mediated_decay
ENST00000588952 (DNMT1-012) 10173090-10231286 protein_coding
ENST00000589091 (DNMT1-025) 10140689-10141446 retained_intron
ENST00000589294 (DNMT1-027) 10137467-10138470 retained_intron
ENST00000589349 (DNMT1-016) 10159912-10166671 retained_intron
ENST00000589351 (DNMT1-024) 10140254-10141572 retained_intron
ENST00000589538 (DNMT1-029) 10140030-10143901 processed_transcript
ENST00000590619 (DNMT1-005) 10177319-10180381 protein_coding
ENST00000591239 (DNMT1-022) 10141697-10143791 retained_intron
ENST00000591764 (DNMT1-007) 10159944-10166666 retained_intron
ENST00000591798 (DNMT1-028) 10133351-10135517 processed_transcript
ENST00000592054 (DNMT1-013) 10175563-10194626 protein_coding
ENST00000592342 (DNMT1-011) 10175542-10231273 protein_coding
ENST00000592705 (DNMT1-006) 10133346-10194934 nonsense_mediated_decay
ENST00000593049 (DNMT1-021) 10140280-10142896 processed_transcript
ENSG00000267534 (S1PR2)
sphingosine-1-phosphate receptor 2 		ENST00000590320 (S1PR2-001) 10223844-10231272 protein_coding
CIL_00039H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043895-ENSMUSG00000003299 CGP 10090 9:20965952-21008835
GeneTranscriptPositionBiotype
ENSMUSG00000003299 (Mrpl4)
mitochondrial ribosomal protein L4 		ENSMUST00000003386 (Mrpl4-201) 21002737-21008835 protein_coding
ENSMUSG00000043895 (S1pr2)
sphingosine-1-phosphate receptor 2 		ENSMUST00000054197 (S1pr2-201) 20965952-20976793 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039H_0001ENSG00000105364ENST00000253099ENST00000307422ENST00000588502ENST00000590669ENST00000592514ENSG00000130816ENST00000340748ENST00000359526ENST00000540357ENST00000585920ENST00000586799ENST00000586988ENST00000588913ENST00000591764ENST00000592054ENST00000592705ENSG00000267534ENST00000590320CIL_00039H_0002ENSMUSG00000003299ENSMUST00000003386ENSMUSG00000043895ENSMUST00000054197
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105364 ENST00000253099 N/A N/A N/A 3.084±0.00 N/A 2.804±0.00 N/A 6.469±0.00 N/A N/A N/A N/A 21.619±0.00 N/A
ENST00000307422 N/A N/A N/A N/A 12.194±0.00 N/A 12.272±0.00 N/A 29.826±0.00 N/A 14.059±0.00 33.145±0.00 23.001±1.87 13.945±0.00
ENST00000393733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588502 N/A N/A 5.114±0.00 N/A N/A 2.738±0.00 N/A N/A N/A N/A N/A 6.248±0.00 N/A N/A
ENST00000588963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590669 N/A N/A N/A 2.642±0.00 N/A N/A N/A N/A N/A N/A 3.191±0.00 N/A N/A N/A
ENST00000590702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592514 17.892±0.00 N/A N/A 14.604±9.29 10.407±5.80 18.351±0.00 9.666±5.31 30.974±0.00 N/A N/A 6.816±0.00 38.064±9.05 19.772±0.00 13.466±3.56
ENSG00000130816 ENST00000340748 N/A N/A 0.641±0.00 1.184±0.63 1.098±0.00 0.930±0.00 N/A 1.039±0.00 0.526±0.16 N/A 0.925±0.00 3.692±1.04 11.479±0.53 N/A
ENST00000359526 3.541±0.00 3.512±0.00 N/A 2.921±0.00 1.207±0.00 2.215±0.00 1.070±0.00 1.580±0.00 0.838±0.00 3.035±0.00 N/A 4.954±3.52 9.167±4.35 7.928±0.09
ENST00000540357 2.336±0.00 5.016±0.00 N/A N/A 2.236±0.43 1.574±0.00 1.119±0.00 3.495±0.00 1.488±0.00 N/A 0.687±0.00 6.504±3.39 17.123±8.18 10.897±4.30
ENST00000585843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585920 N/A N/A 3.217±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586799 N/A N/A N/A N/A N/A N/A N/A N/A 4.272±0.00 N/A 3.481±0.00 N/A N/A N/A
ENST00000586800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586988 N/A N/A 2.438±0.00 3.868±0.00 N/A 3.449±0.00 2.140±0.00 N/A 3.976±0.00 N/A N/A N/A N/A N/A
ENST00000587197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588913 N/A N/A N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A N/A N/A
ENST00000588952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591764 N/A N/A N/A N/A N/A N/A N/A N/A 7.429±0.00 N/A N/A N/A 54.812±0.00 32.149±0.00
ENST00000591798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.964±0.00 N/A N/A N/A
ENST00000592342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592705 N/A N/A 0.281±0.00 N/A N/A 0.697±0.00 0.536±0.00 N/A N/A N/A 1.255±0.00 N/A N/A N/A
ENST00000593049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267534 ENST00000590320 7.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.845±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003299 ENSMUST00000003386 43.042±7.74 87.398±5.87 36.689±0.42 20.277±3.11 36.785±13.87 31.432±1.44 67.895±19.04 72.120±7.32 25.085±5.76 40.375±2.13 28.485±0.74 37.195±10.17 35.223±11.33 14.963±6.49
ENSMUSG00000043895 ENSMUST00000054197 8.457±1.28 16.515±0.75 10.146±0.38 2.162±1.27 13.886±4.12 5.696±1.10 3.625±0.15 3.093±0.48 2.766±0.57 21.835±5.67 0.578±0.14 21.875±6.89 15.186±7.15 0.653±0.28

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