C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA (cytosine-5-)-methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340748 DNMT1-001 ENSG00000130816 9606 - 19:10133346-10195135 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaENST00000340748
Transcript ID Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta
ENST00000340748 0.641±0.00 1.184±0.63 1.098±0.00 0.930±0.00 1.039±0.00 0.526±0.16 0.925±0.00 3.692±1.04 11.479±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BQ CIL_0004BQ_0002 CGP 19:10115017-10231286
CIL_000773 CIL_000773_0002 CGP 19:10133345-10231286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003886 IDA:IEA DNA (cytosine-5-)-methyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006306 TAS DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0008168 IEA methyltransferase activity
GO:0008270 IEA zinc ion binding
GO:0009008 IDA DNA-methyltransferase activity
GO:0010216 IDA maintenance of DNA methylation
GO:0010628 IMP positive regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0051573 IMP negative regulation of histone H3-K9 methylation
GO:0090116 IEA C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178110 Dnmt1-203 protein_coding Mus_musculus 0 3103
ENSMUST00000004202 Dnmt1-201 protein_coding Mus_musculus 0 3103
ENSMUST00000177754 Dnmt1-202 protein_coding Mus_musculus 0 3103

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