C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003C4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116035-ENSG00000116039 CGP 9606 2:70900590-70965406
GeneTranscriptPositionBiotype
ENSG00000116035 (VAX2)
ventral anterior homeobox 2 		ENST00000234392 (VAX2-001) 70900590-70933446 protein_coding
ENSG00000116039 (ATP6V1B1)
ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 		ENST00000234396 (ATP6V1B1-001) 70935882-70965397 protein_coding
ENST00000412314 (ATP6V1B1-005) 70935921-70965401 protein_coding
ENST00000432098 (ATP6V1B1-006) 70943578-70960077 protein_coding
ENST00000432367 (ATP6V1B1-004) 70935902-70965406 nonsense_mediated_decay
ENST00000433895 (ATP6V1B1-010) 70963622-70965119 protein_coding
ENST00000454446 (ATP6V1B1-007) 70943374-70961032 protein_coding
ENST00000463380 (ATP6V1B1-008) 70957771-70959966 retained_intron
ENST00000495118 (ATP6V1B1-009) 70959939-70961820 retained_intron
ENSG00000226186 (TCEB1P21)
transcription elongation factor B (SIII), polypeptide 1 pseudogene 21 		ENST00000412558 (TCEB1P21-001) 70955899-70956234 processed_pseudogene
CIL_0003C4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034777-ENSMUSG00000006269 CGP 10090 6:83711264-83758809
GeneTranscriptPositionBiotype
ENSMUSG00000006269 (Atp6v1b1)
ATPase, H+ transporting, lysosomal V1 subunit B1 		ENSMUST00000006431 (Atp6v1b1-201) 83743017-83758809 protein_coding
ENSMUSG00000034777 (Vax2)
ventral anterior homeobox 2 		ENSMUST00000037807 (Vax2-004) 83711264-83738313 protein_coding
ENSMUSG00000085794 (Vax2os)
ventral anterior homeobox 2, opposite strand 		ENSMUST00000123402 (Vax2os-001) 83692806-83712201 antisense
ENSMUST00000150233 (Vax2os-002) 83702130-83703543 antisense
ENSMUST00000155159 (Vax2os-003) 83700157-83710932 antisense
ENSMUST00000173883 (Vax2os-005) 83702480-83703622 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003C4_0001ENSG00000116035ENST00000234392ENSG00000116039ENST00000234396ENST00000412314ENST00000432098ENST00000432367ENST00000433895ENST00000454446ENST00000463380ENST00000495118ENSG00000226186ENST00000412558CIL_0003C4_0002ENSMUSG00000006269ENSMUST00000006431ENSMUSG00000034777ENSMUST00000037807ENSMUSG00000085794ENSMUST00000123402ENSMUST00000150233ENSMUST00000155159ENSMUST00000173883
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003C4_0001ENSG00000116035ENST00000234392ENSG00000116039ENST00000234396ENST00000412314ENST00000432098ENST00000432367ENST00000433895ENST00000454446ENST00000463380ENST00000495118ENSG00000226186ENST00000412558CIL_0003C4_0002ENSMUSG00000006269ENSMUST00000006431ENSMUSG00000034777ENSMUST00000037807ENSMUSG00000085794ENSMUST00000123402ENSMUST00000150233ENSMUST00000155159ENSMUST00000173883
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116035 ENST00000234392 0.629±0.00 0.229±0.00 N/A 0.283±0.15 1.305±0.00 1.163±0.00 0.135±0.10 0.261±0.00 N/A 0.466±0.00 N/A 0.806±0.43 0.303±0.15 0.031±0.00
ENSG00000116039 ENST00000234396 N/A N/A 4.407±0.00 N/A 4.358±0.00 N/A 0.019±0.00 33.212±0.00 N/A 3.237±0.00 N/A 1.130±0.77 26.558±1.59 0.130±0.00
ENST00000412314 N/A 0.103±0.00 N/A 0.102±0.00 N/A 0.135±0.00 N/A N/A N/A 0.018±0.00 0.079±0.00 N/A N/A 0.149±0.00
ENST00000432098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.469±0.00 N/A N/A
ENST00000432367 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433895 0.130±0.00 N/A N/A N/A 2.982±0.00 N/A N/A N/A N/A 3.094±0.00 N/A N/A N/A N/A
ENST00000454446 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.489±0.00 N/A 0.198±0.00
ENST00000495118 0.121±0.00 0.300±0.00 3.410±0.00 0.187±0.00 0.890±0.00 N/A 0.030±0.00 N/A N/A N/A N/A 0.690±0.00 N/A 0.066±0.00
ENSG00000226186 ENST00000412558 0.274±0.00 0.139±0.00 N/A N/A 0.323±0.26 0.031±0.00 N/A 0.068±0.00 N/A 0.737±0.00 N/A 0.198±0.00 N/A 0.154±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006269 ENSMUST00000006431 N/A N/A 0.006±0.00 0.078±0.00 15.975±5.33 0.022±0.00 0.564±0.00 55.642±8.79 0.019±0.01 3.252±0.36 N/A 1.368±0.38 0.091±0.09 2.117±0.64
ENSMUSG00000034777 ENSMUST00000037807 N/A 0.031±0.01 0.022±0.00 0.055±0.00 0.046±0.02 N/A N/A 0.043±0.00 0.011±0.00 0.020±0.00 0.055±0.00 0.093±0.05 2.400±2.84 0.871±0.35
ENSMUSG00000085794 ENSMUST00000123402 N/A N/A 0.012±0.00 0.016±0.00 N/A N/A N/A N/A N/A N/A 0.021±0.00 0.095±0.00 0.259±0.24 N/A
ENSMUST00000150233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A
ENSMUST00000155159 0.011±0.00 0.040±0.01 N/A 0.010±0.00 0.033±0.01 0.026±0.00 0.012±0.00 0.010±0.00 0.010±0.01 0.009±0.00 0.012±0.00 0.042±0.02 0.058±0.07 0.319±0.17
ENSMUST00000173883 N/A N/A N/A 0.058±0.00 0.124±0.03 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 2.147±0.77

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