C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ventral anterior homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234392 VAX2-001 ENSG00000116035 9606 + 2:70900590-70933446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000234392
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000234392 0.629±0.00 0.229±0.00 0.283±0.15 1.305±0.00 1.163±0.00 0.135±0.10 0.261±0.00 0.466±0.00 0.806±0.43 0.303±0.15 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BZ CIL_0003BZ_0001 CGP 2:70830214-70933446
CIL_0003C4 CIL_0003C4_0001 CGP 2:70900590-70965406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007398 TAS ectoderm development
GO:0007409 IEA axonogenesis
GO:0007601 TAS visual perception
GO:0009950 IEA dorsal/ventral axis specification
GO:0016055 IEA Wnt signaling pathway
GO:0030900 ISS forebrain development
GO:0031490 IEA chromatin DNA binding
GO:0043010 IEA camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0048048 IEA embryonic eye morphogenesis
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037807 Vax2-004 protein_coding Mus_musculus 0 1003
ENSMUST00000172821 Vax1-001 protein_coding Mus_musculus 0 250

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