C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ventral anterior homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037807 Vax2-004 ENSMUSG00000034777 10090 + 6:83711264-83738313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037807
Transcript ID Adrenal Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037807 0.031±0.01 0.022±0.00 0.055±0.00 0.046±0.02 0.043±0.00 0.011±0.00 0.020±0.00 0.055±0.00 0.093±0.05 2.400±2.84 0.871±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BZ CIL_0003BZ_0002 CGP 6:83671207-83738313
CIL_0003C4 CIL_0003C4_0002 CGP 6:83711264-83758809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007409 IMP axonogenesis
GO:0009950 IMP dorsal/ventral axis specification
GO:0016055 IEA Wnt signaling pathway
GO:0030900 IMP forebrain development
GO:0031490 IDA chromatin DNA binding
GO:0043010 IGI camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0048048 IDA embryonic eye morphogenesis
GO:0060041 IDA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000234392 VAX2-001 protein_coding Homo_sapiens 0 1003
ENST00000277905 VAX1-002 protein_coding Homo_sapiens 0 211
ENST00000368592 NKX6-2-001 protein_coding Homo_sapiens 0.0000003 62
ENST00000369206 VAX1-001 protein_coding Homo_sapiens 0 289

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