C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003O6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060783-ENSDARG00000054007 CGP 7955 22:40718184-40819389
GeneTranscriptPositionBiotype
ENSDARG00000054007 (ppp1r2)
protein phosphatase 1, regulatory (inhibitor) subunit 2 		ENSDART00000076128 (ppp1r2-001) 40789858-40819389 protein_coding
ENSDARG00000060783 (acap2)
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 		ENSDART00000085931 (acap2-201) 40718184-40781832 protein_coding
ENSDART00000124742 (acap2-001) 40732090-40782075 protein_coding
ENSDART00000143190 (acap2-002) 40718184-40723280 protein_coding

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CIL_0003O6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114331-ENSG00000184203 CGP 9606 3:195274736-195543386
GeneTranscriptPositionBiotype
ENSG00000114331 (ACAP2)
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 		ENST00000326793 (ACAP2-001) 195274736-195443078 protein_coding
ENST00000423531 (ACAP2-006) 195333082-195356212 protein_coding
ENST00000439666 (ACAP2-005) 195381009-195442855 protein_coding
ENST00000439758 (ACAP2-007) 195302148-195342609 protein_coding
ENST00000447662 (ACAP2-004) 195381026-195442905 nonsense_mediated_decay
ENST00000450200 (ACAP2-010) 195292314-195301644 protein_coding
ENST00000466876 (ACAP2-011) 195285328-195291745 retained_intron
ENST00000471593 (ACAP2-008) 195326332-195336965 retained_intron
ENST00000472860 (ACAP2-012) 195279034-195279799 processed_transcript
ENST00000475905 (ACAP2-009) 195295446-195302115 retained_intron
ENST00000480906 (ACAP2-002) 195335899-195443043 retained_intron
ENST00000481463 (ACAP2-013) 195342606-195442276 processed_transcript
ENST00000484296 (ACAP2-014) 195297224-195306865 retained_intron
ENST00000490224 (ACAP2-003) 195441793-195443044 retained_intron
ENST00000618471 (ACAP2-201) 195278515-195442907 protein_coding
ENSG00000207368 (Y_RNA)
Y RNA 		ENST00000384638 (Y_RNA.1-742) 195419436-195419546 misc_RNA
ENSG00000227433 (AC069213.4)
 ENST00000434369 (AC069213.4-001) 195349664-195350030 processed_pseudogene
ENSG00000229325 (ACAP2-IT1)
ACAP2 intronic transcript 1 (non-protein coding) 		ENST00000419899 (ACAP2-IT1-001) 195280723-195282741 sense_intronic
ENSG00000252620 (RNU6ATAC24P)
RNA, U6atac small nuclear 24, pseudogene 		ENST00000516811 (RNU6ATAC24P-201) 195523087-195523221 snRNA

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CIL_0003O6_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049076-ENSMUSG00000047714 CGP 10090 16:31092413-31275277
GeneTranscriptPositionBiotype
ENSMUSG00000047714 (Ppp1r2)
protein phosphatase 1, regulatory (inhibitor) subunit 2 		ENSMUST00000060188 (Ppp1r2-001) 31251537-31275277 protein_coding
ENSMUST00000115233 (Ppp1r2-002) 31257975-31274992 protein_coding
ENSMUSG00000049076 (Acap2)
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 		ENSMUST00000058033 (Acap2-201) 31092413-31201238 protein_coding
ENSMUSG00000098403 (Gm27415)
predicted gene, 27415 		ENSMUST00000183720 (Gm27415-201) 31261505-31261599 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003O6_0001ENSDARG00000054007ENSDART00000076128ENSDARG00000060783ENSDART00000085931ENSDART00000124742ENSDART00000143190CIL_0003O6_0002ENSG00000114331ENST00000326793ENST00000423531ENST00000439666ENST00000439758ENST00000447662ENST00000450200ENST00000466876ENST00000471593ENST00000472860ENST00000475905ENST00000480906ENST00000481463ENST00000484296ENST00000490224ENST00000618471ENSG00000207368ENST00000384638ENSG00000227433ENST00000434369ENSG00000229325ENST00000419899ENSG00000252620ENST00000516811CIL_0003O6_0003ENSMUSG00000047714ENSMUST00000060188ENSMUST00000115233ENSMUSG00000049076ENSMUST00000058033ENSMUSG00000098403ENSMUST00000183720
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003O6_0001ENSDARG00000054007ENSDART00000076128ENSDARG00000060783ENSDART00000085931ENSDART00000124742ENSDART00000143190CIL_0003O6_0002ENSG00000114331ENST00000326793ENST00000450200ENST00000480906ENST00000618471ENSG00000207368ENST00000384638ENSG00000227433ENST00000434369ENSG00000229325ENST00000419899ENSG00000252620ENST00000516811CIL_0003O6_0003ENSMUSG00000047714ENSMUST00000060188ENSMUST00000115233ENSMUSG00000049076ENSMUST00000058033ENSMUSG00000098403ENSMUST00000183720
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054007 ENSDART00000076128 N/A N/A N/A 12.589±6.43 N/A N/A 6.863±1.61 19.736±5.44 1.328±0.00 N/A 5.203±0.00 N/A N/A N/A
ENSDARG00000060783 ENSDART00000085931 N/A N/A N/A N/A N/A N/A 1.950±0.70 0.423±0.00 N/A N/A 1.470±0.00 N/A N/A N/A
ENSDART00000124742 N/A N/A N/A 0.562±0.48 N/A N/A 4.405±0.00 2.000±0.00 0.314±0.00 N/A N/A N/A N/A N/A
ENSDART00000143190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.119±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114331 ENST00000326793 6.508±0.00 3.866±0.00 2.748±0.00 2.704±0.00 3.452±1.10 3.104±0.80 1.688±0.40 1.873±0.87 3.349±2.13 4.650±3.09 1.168±0.45 3.344±2.00 1.875±0.71 1.115±0.00
ENST00000423531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.953±0.00
ENST00000466876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.596±0.00 N/A N/A N/A
ENST00000481463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618471 N/A N/A N/A 2.017±0.00 N/A 2.524±0.00 N/A N/A 3.960±0.00 3.966±0.00 N/A 2.119±0.00 N/A N/A
ENSG00000207368 ENST00000384638 N/A 0.169±0.00 N/A 0.335±0.00 19.601±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227433 ENST00000434369 N/A 0.165±0.00 N/A 0.414±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229325 ENST00000419899 0.079±0.00 0.294±0.00 2.256±0.00 4.361±0.00 1.331±0.97 4.475±0.00 0.103±0.01 0.133±0.00 0.555±0.54 1.788±1.53 N/A 0.570±0.50 N/A 0.096±0.01
ENSG00000252620 ENST00000516811 N/A 4.762±0.00 N/A 0.565±0.00 N/A N/A 0.480±0.00 0.688±0.00 N/A N/A N/A 19.348±0.00 N/A 0.312±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047714 ENSMUST00000060188 22.165±7.23 128.919±13.02 10.437±4.19 4.339±1.90 39.281±27.38 70.203±7.64 16.301±3.99 21.375±10.68 8.216±5.53 88.864±45.40 16.000±8.58 56.034±32.83 6.185±3.94 10.854±8.50
ENSMUST00000115233 N/A N/A N/A 28.044±0.00 N/A N/A N/A N/A 6.127±1.30 N/A N/A 35.068±0.00 23.609±14.31 37.050±31.20
ENSMUSG00000049076 ENSMUST00000058033 8.284±3.85 13.958±1.99 15.583±3.67 5.219±0.94 11.529±3.24 15.533±4.62 2.850±0.54 4.784±1.35 3.825±0.42 21.033±2.62 1.456±0.44 15.653±5.35 4.631±1.08 1.615±0.64
ENSMUSG00000098403 ENSMUST00000183720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.188±0.00 N/A

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