C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057255-ENSDARG00000009549 CGP 7955 23:21555455-21670989
GeneTranscriptPositionBiotype
ENSDARG00000057255 (emc1)
ER membrane protein complex subunit 1 		ENSDART00000104268 (emc1-001) 21555455-21571275 protein_coding
ENSDART00000141903 (emc1-002) 21555532-21571664 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0003WN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078517-ENSMUSG00000066036 CGP 10090 4:139352587-139489588
GeneTranscriptPositionBiotype
ENSMUSG00000066036 (Ubr4)
ubiquitin protein ligase E3 component n-recognin 4 		ENSMUST00000097822 (Ubr4-001) 139380659-139489588 protein_coding
ENSMUST00000129779 (Ubr4-006) 139435010-139438142 protein_coding
ENSMUST00000129949 (Ubr4-002) 139414470-139451973 protein_coding
ENSMUST00000133220 (Ubr4-003) 139380669-139397698 processed_transcript
ENSMUST00000135534 (Ubr4-011) 139480380-139482682 retained_intron
ENSMUST00000136230 (Ubr4-007) 139463259-139463975 retained_intron
ENSMUST00000141327 (Ubr4-010) 139479127-139481053 retained_intron
ENSMUST00000145273 (Ubr4-008) 139477053-139480810 retained_intron
ENSMUST00000145659 (Ubr4-009) 139478944-139482600 processed_transcript
ENSMUST00000147999 (Ubr4-004) 139352609-139469763 protein_coding
ENSMUST00000149995 (Ubr4-005) 139416212-139417026 retained_intron
ENSMUST00000165860 (Ubr4-201) 139380659-139489530 protein_coding
ENSMUSG00000078517 (Emc1)
ER membrane protein complex subunit 1 		ENSMUST00000042096 (Emc1-001) 139352587-139378730 protein_coding
ENSMUST00000082262 (Emc1-201) 139352593-139378730 protein_coding
ENSMUST00000144335 (Emc1-003) 139352609-139354464 processed_transcript
ENSMUST00000155700 (Emc1-002) 139359247-139375927 processed_transcript
ENSMUST00000179784 (Emc1-202) 139352593-139378730 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WN_0001ENSDARG00000057255ENSDART00000104268ENSDART00000141903CIL_0003WN_0002ENSMUSG00000066036ENSMUST00000097822ENSMUST00000129779ENSMUST00000129949ENSMUST00000133220ENSMUST00000135534ENSMUST00000136230ENSMUST00000141327ENSMUST00000145273ENSMUST00000145659ENSMUST00000147999ENSMUST00000149995ENSMUST00000165860ENSMUSG00000078517ENSMUST00000042096ENSMUST00000082262ENSMUST00000144335ENSMUST00000155700ENSMUST00000179784
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WN_0001ENSDARG00000057255ENSDART00000104268ENSDART00000141903CIL_0003WN_0002ENSMUSG00000066036ENSMUST00000097822ENSMUST00000129949ENSMUST00000147999ENSMUST00000165860ENSMUSG00000078517ENSMUST00000042096ENSMUST00000155700
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057255 ENSDART00000104268 N/A N/A N/A 7.884±1.99 N/A N/A 5.890±1.17 7.307±0.00 1.441±0.00 N/A 3.503±0.00 N/A N/A N/A
ENSDART00000141903 N/A N/A N/A 1.607±0.57 N/A N/A 1.509±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000066036 ENSMUST00000097822 9.729±2.14 10.821±1.48 7.286±3.07 7.476±0.50 19.174±3.57 12.021±1.61 4.149±1.32 8.744±1.33 6.734±3.13 15.938±0.51 4.815±1.46 16.446±3.68 15.115±11.38 24.150±8.58
ENSMUST00000129779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129949 N/A N/A N/A 16.554±0.00 N/A N/A N/A N/A N/A N/A N/A 13.159±0.00 N/A 10.139±0.00
ENSMUST00000133220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147999 N/A 17.241±0.86 12.252±0.00 N/A N/A 16.234±3.12 N/A 8.466±0.00 3.878±0.00 N/A N/A 19.072±2.07 N/A N/A
ENSMUST00000149995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165860 N/A N/A N/A 3.387±0.00 14.021±0.00 N/A 3.315±0.20 N/A N/A N/A 5.480±1.37 5.985±0.99 N/A N/A
ENSMUSG00000078517 ENSMUST00000042096 10.869±1.33 N/A 8.667±0.00 N/A N/A N/A N/A N/A 7.017±2.70 N/A N/A 8.072±0.00 10.391±0.00 N/A
ENSMUST00000082262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155700 25.189±2.17 26.338±1.94 16.426±0.00 20.290±1.25 29.628±1.26 16.618±2.43 18.715±2.51 17.465±3.74 13.460±3.81 29.832±1.38 N/A 33.068±9.53 N/A N/A
ENSMUST00000179784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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