C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097822 Ubr4-001 ENSMUSG00000066036 10090 + 4:139380659-139489588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097822
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097822 9.729±2.14 10.821±1.48 7.286±3.07 7.476±0.50 19.174±3.57 12.021±1.61 4.149±1.32 8.744±1.33 6.734±3.13 15.938±0.51 4.815±1.46 16.446±3.68 15.115±11.38 24.150±8.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WN CIL_0003WN_0002 CGP 4:139352587-139489588
CIL_0003WQ CIL_0003WQ_0002 CGP 4:139352609-139620382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375218 UBR4-005 protein_coding Homo_sapiens 0 1090
ENST00000375224 UBR4-004 protein_coding Homo_sapiens 0 3925
ENST00000375225 UBR4-002 protein_coding Homo_sapiens 0 804
ENST00000375254 UBR4-001 protein_coding Homo_sapiens 0 19570
ENST00000417040 UBR4-007 protein_coding Homo_sapiens 0 4455
ENST00000419533 UBR4-008 retained_intron Homo_sapiens 0 5705
ENST00000425413 UBR4-006 protein_coding Homo_sapiens 0 1879
ENST00000459947 UBR4-003 retained_intron Homo_sapiens 0 593
ENST00000466969 UBR4-012 processed_transcript Homo_sapiens 0 279
ENST00000467272 UBR4-011 processed_transcript Homo_sapiens 0 1026
ENST00000475973 UBR4-013 processed_transcript Homo_sapiens 0 348
ENST00000483922 UBR4-010 retained_intron Homo_sapiens 0 350
ENST00000486515 UBR4-009 processed_transcript Homo_sapiens 0 472
ENST00000492606 UBR4-015 retained_intron Homo_sapiens 0 276
ENST00000494503 UBR4-016 processed_transcript Homo_sapiens 0 610
ENST00000497018 UBR4-017 processed_transcript Homo_sapiens 0.000000000000004 84

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