C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3 component n-recognin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066036 Ubr4 10090 + 4:139352609-139489588 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097822 Ubr4-001 139380659-139489588 protein_coding
  ENSMUST00000129779 Ubr4-006 139435010-139438142 protein_coding
  ENSMUST00000129949 Ubr4-002 139414470-139451973 protein_coding
  ENSMUST00000133220 Ubr4-003 139380669-139397698 processed_transcript
  ENSMUST00000135534 Ubr4-011 139480380-139482682 retained_intron
  ENSMUST00000136230 Ubr4-007 139463259-139463975 retained_intron
  ENSMUST00000141327 Ubr4-010 139479127-139481053 retained_intron
  ENSMUST00000145273 Ubr4-008 139477053-139480810 retained_intron
  ENSMUST00000145659 Ubr4-009 139478944-139482600 processed_transcript
  ENSMUST00000147999 Ubr4-004 139352609-139469763 protein_coding
  ENSMUST00000149995 Ubr4-005 139416212-139417026 retained_intron
  ENSMUST00000165860 Ubr4-201 139380659-139489530 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097822ENSMUST00000129949ENSMUST00000147999ENSMUST00000165860
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097822 9.729±2.14 10.821±1.48 7.286±3.07 7.476±0.50 19.174±3.57 12.021±1.61 4.149±1.32 8.744±1.33 6.734±3.13 15.938±0.51 4.815±1.46 16.446±3.68 15.115±11.38 24.150±8.58
ENSMUST00000129949 N/A N/A N/A 16.554±0.00 N/A N/A N/A N/A N/A N/A N/A 13.159±0.00 N/A 10.139±0.00
ENSMUST00000147999 N/A 17.241±0.86 12.252±0.00 N/A N/A 16.234±3.12 N/A 8.466±0.00 3.878±0.00 N/A N/A 19.072±2.07 N/A N/A
ENSMUST00000165860 N/A N/A N/A 3.387±0.00 14.021±0.00 N/A 3.315±0.20 N/A N/A N/A 5.480±1.37 5.985±0.99 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WN CIL_0003WN_0002 CGP 4:139352587-139489588
CIL_0003WQ CIL_0003WQ_0002 CGP 4:139352609-139620382

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009549 ubr4 ubiquitin protein ligase E3 component n-recognin 4 protein_coding Danio_rerio
ENSG00000127481 UBR4 ubiquitin protein ligase E3 component n-recognin 4 protein_coding Homo_sapiens

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