C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147999 Ubr4-004 ENSMUSG00000066036 10090 + 4:139352609-139469763 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonKidneyLiverOvaryENSMUST00000147999
Transcript ID Adrenal Bladder Colon Kidney Liver Ovary
ENSMUST00000147999 17.241±0.86 12.252±0.00 16.234±3.12 8.466±0.00 3.878±0.00 19.072±2.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WN CIL_0003WN_0002 CGP 4:139352587-139489588
CIL_0003WQ CIL_0003WQ_0002 CGP 4:139352609-139620382

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356068 EMC1-006 protein_coding Homo_sapiens 0.000000000000002 86
ENST00000375199 EMC1-009 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000375208 EMC1-002 protein_coding Homo_sapiens 0.00000000000003 86
ENST00000375218 UBR4-005 protein_coding Homo_sapiens 0 1090
ENST00000375224 UBR4-004 protein_coding Homo_sapiens 0 970
ENST00000375254 UBR4-001 protein_coding Homo_sapiens 0 4935
ENST00000417040 UBR4-007 protein_coding Homo_sapiens 0 819
ENST00000425413 UBR4-006 protein_coding Homo_sapiens 0 837
ENST00000466969 UBR4-012 processed_transcript Homo_sapiens 0 279
ENST00000467272 UBR4-011 processed_transcript Homo_sapiens 0 209
ENST00000475079 EMC1-011 nonsense_mediated_decay Homo_sapiens 0.000000000000003 86
ENST00000477853 EMC1-003 protein_coding Homo_sapiens 0.00000000000004 86
ENST00000488681 EMC1-010 retained_intron Homo_sapiens 0.000000000000003 86
ENST00000494503 UBR4-016 processed_transcript Homo_sapiens 0 610

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