C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000495392 RP11-543P15.1-001 ENSG00000227081 9606 - 12:3211663-3211917 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000495392
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000495392 0.196±0.00 1.757±0.00 0.881±0.00 1.048±0.00 0.317±0.00 0.393±0.00 0.233±0.16 1.224±1.10 0.579±0.00 0.179±0.00 1.007±0.61 0.403±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XN CIL_0003XN_0002 CGP 12:3077355-3593973

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053150 Rps27rt-001 protein_coding Mus_musculus 0 412
ENSMUST00000170122 Rps27-201 protein_coding Mus_musculus 0 412
ENSMUST00000118062 Gm15531-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000173599 Gm19246-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000118179 Rps27-ps1-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000121307 Gm13009-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000119835 Gm14175-001 unprocessed_pseudogene Mus_musculus 0 289
ENSMUST00000119164 Gm11572-001 processed_pseudogene Mus_musculus 5.60519e-45 183

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