C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041171-ENSDARG00000056886 CGP 7955 9:28766892-28783494
GeneTranscriptPositionBiotype
ENSDARG00000000747 (lcmt2)
leucine carboxyl methyltransferase 2 		ENSDART00000112415 (lcmt2-001) 28753986-28767636 protein_coding
ENSDART00000144481 (lcmt2-002) 28753825-28767145 nonsense_mediated_decay
ENSDARG00000041171 (crygs2)
crystallin, gamma S2 		ENSDART00000060347 (crygs2-001) 28766892-28771668 protein_coding
ENSDART00000136691 (crygs2-002) 28770062-28771654 processed_transcript
ENSDARG00000056886 (tbccd1)
TBCC domain containing 1 		ENSDART00000064156 (tbccd1-001) 28774526-28783494 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003YB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213139-ENSG00000113838 CGP 9606 3:186538441-186570543
GeneTranscriptPositionBiotype
ENSG00000090520 (DNAJB11)
DnaJ (Hsp40) homolog, subfamily B, member 11 		ENST00000265028 (DNAJB11-201) 186570678-186585799 protein_coding
ENST00000418776 (DNAJB11-005) 186581995-186597103 protein_coding
ENST00000439351 (DNAJB11-001) 186567403-186585800 protein_coding
ENST00000464877 (DNAJB11-004) 186572104-186578060 retained_intron
ENST00000495390 (DNAJB11-003) 186578298-186585793 retained_intron
ENST00000538831 (DNAJB11-202) 186596976-186597203 protein_coding
ENSG00000113838 (TBCCD1)
TBCC domain containing 1 		ENST00000338733 (TBCCD1-001) 186546339-186567352 protein_coding
ENST00000413695 (TBCCD1-003) 186556590-186570543 protein_coding
ENST00000424280 (TBCCD1-201) 186546073-186570543 protein_coding
ENST00000430560 (TBCCD1-004) 186558417-186564345 protein_coding
ENST00000446782 (TBCCD1-002) 186546341-186570318 protein_coding
ENST00000479590 (TBCCD1-005) 186553343-186554475 processed_transcript
ENSG00000213139 (CRYGS)
crystallin, gamma S 		ENST00000307944 (CRYGS-002) 186538599-186544451 protein_coding
ENST00000392499 (CRYGS-001) 186538441-186546702 protein_coding
ENST00000460288 (CRYGS-003) 186538599-186540520 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003YB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033501-ENSMUSG00000004462 CGP 10090 16:22805203-22857569
GeneTranscriptPositionBiotype
ENSMUSG00000004462 (Tbccd1)
TBCC domain containing 1 		ENSMUST00000004576 (Tbccd1-201) 22813215-22857569 protein_coding
ENSMUSG00000033501 (Crygs)
crystallin, gamma S 		ENSMUST00000040592 (Crygs-201) 22805203-22811410 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YB_0001ENSDARG00000000747ENSDART00000112415ENSDART00000144481ENSDARG00000041171ENSDART00000060347ENSDART00000136691ENSDARG00000056886ENSDART00000064156CIL_0003YB_0002ENSG00000090520ENST00000265028ENST00000418776ENST00000439351ENST00000464877ENST00000495390ENST00000538831ENSG00000113838ENST00000338733ENST00000413695ENST00000424280ENST00000430560ENST00000446782ENST00000479590ENSG00000213139ENST00000307944ENST00000392499ENST00000460288CIL_0003YB_0003ENSMUSG00000004462ENSMUST00000004576ENSMUSG00000033501ENSMUST00000040592
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YB_0001ENSDARG00000000747ENSDART00000112415ENSDART00000144481ENSDARG00000041171ENSDART00000060347ENSDARG00000056886ENSDART00000064156CIL_0003YB_0002ENSG00000090520ENST00000265028ENST00000418776ENST00000439351ENST00000495390ENSG00000113838ENST00000338733ENST00000446782ENSG00000213139ENST00000307944CIL_0003YB_0003ENSMUSG00000004462ENSMUST00000004576ENSMUSG00000033501ENSMUST00000040592
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000747 ENSDART00000112415 N/A N/A N/A 0.114±0.00 N/A N/A 0.308±0.03 1.838±0.00 0.716±0.00 N/A N/A N/A N/A N/A
ENSDART00000144481 N/A N/A N/A 0.119±0.00 N/A N/A 0.158±0.00 N/A N/A N/A 0.231±0.00 N/A N/A N/A
ENSDARG00000041171 ENSDART00000060347 N/A N/A N/A 0.525±0.08 N/A N/A 0.803±0.00 2.156±0.00 0.560±0.00 N/A 0.075±0.00 N/A N/A N/A
ENSDART00000136691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000056886 ENSDART00000064156 N/A N/A N/A 1.281±0.38 N/A N/A 1.426±1.18 2.632±1.42 0.518±0.00 N/A 0.657±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090520 ENST00000265028 20.961±0.00 31.460±0.00 5.187±0.00 9.308±2.35 13.672±1.88 19.691±6.66 6.517±4.52 34.584±20.96 30.235±24.29 16.564±8.95 4.999±3.75 233.439±322.92 58.086±34.52 64.437±33.34
ENST00000418776 20.356±0.00 42.330±0.00 N/A 12.095±0.00 18.318±0.00 33.601±0.00 N/A 50.897±0.00 43.805±0.00 23.125±0.00 N/A 40.150±0.00 N/A 36.145±0.00
ENST00000439351 N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000464877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495390 N/A N/A N/A 1.035±0.00 1.973±0.00 1.642±0.00 N/A 1.582±0.00 N/A N/A N/A 38.793±27.84 N/A N/A
ENST00000538831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000113838 ENST00000338733 N/A N/A N/A 2.294±0.00 3.150±0.26 3.135±0.00 2.296±0.00 N/A 2.718±0.00 1.817±0.00 1.722±1.08 4.575±0.00 3.072±0.00 10.393±0.00
ENST00000413695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446782 N/A N/A N/A 2.234±0.00 N/A N/A 0.555±0.00 3.332±0.00 N/A 2.681±0.00 N/A N/A N/A N/A
ENST00000479590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213139 ENST00000307944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.799±0.00 N/A N/A N/A
ENST00000392499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004462 ENSMUST00000004576 2.837±0.83 2.148±0.84 4.792±1.32 2.715±1.54 2.496±1.17 3.878±1.82 0.732±0.15 4.689±2.05 8.708±6.29 2.372±1.46 1.317±0.61 3.633±1.71 4.550±2.21 1.428±0.20
ENSMUSG00000033501 ENSMUST00000040592 N/A N/A N/A 0.045±0.03 N/A N/A N/A 0.314±0.12 0.108±0.09 N/A N/A 0.125±0.04 0.042±0.02 0.221±0.08

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