C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBCC domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004576 Tbccd1-201 ENSMUSG00000004462 10090 - 16:22813215-22857569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004576
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004576 2.837±0.83 2.148±0.84 4.792±1.32 2.715±1.54 2.496±1.17 3.878±1.82 0.732±0.15 4.689±2.05 8.708±6.29 2.372±1.46 1.317±0.61 3.633±1.71 4.550±2.21 1.428±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PR CIL_0008PR_0002 VISTA 16:22397940-22999797
CIL_0003YB CIL_0003YB_0003 CGP 16:22805203-22857569
CIL_0006RP CIL_0006RP_0002 CGP 16:22813215-22879634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0007010 IEA cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0030334 ISS regulation of cell migration
GO:0031616 ISS spindle pole centrosome
GO:0051661 ISS maintenance of centrosome location
GO:0051684 ISS maintenance of Golgi location

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338733 TBCCD1-001 protein_coding Homo_sapiens 0 1631
ENST00000424280 TBCCD1-201 protein_coding Homo_sapiens 0 1666
ENST00000446782 TBCCD1-002 protein_coding Homo_sapiens 0 1282
ENST00000479590 TBCCD1-005 processed_transcript Homo_sapiens 0 213
ENST00000552943 WDR90-003 retained_intron Homo_sapiens 0.0002 53
ENST00000554784 RP11-348M3.2-001 processed_pseudogene Homo_sapiens 0 1240

Loading