C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBCC domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338733 TBCCD1-001 ENSG00000113838 9606 - 3:186546339-186567352 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000338733
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000338733 2.294±0.00 3.150±0.26 3.135±0.00 2.296±0.00 2.718±0.00 1.817±0.00 1.722±1.08 4.575±0.00 3.072±0.00 10.393±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RN CIL_0006RN_0001 CGP 3:186105668-186546702
CIL_0008PR CIL_0008PR_0001 VISTA 3:186106052-186707543
CIL_0003YB CIL_0003YB_0002 CGP 3:186538441-186570543
CIL_0006RP CIL_0006RP_0001 CGP 3:186546073-186597203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0007010 IEA cytoskeleton organization
GO:0008360 IMP regulation of cell shape
GO:0030334 IMP regulation of cell migration
GO:0031616 IDA spindle pole centrosome
GO:0051661 IMP maintenance of centrosome location
GO:0051684 IMP maintenance of Golgi location

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004576 Tbccd1-201 protein_coding Mus_musculus 0 1631
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000006 68

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