Notice (8): Undefined index: CIL_000431_0004 [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_000431_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000127515' => 'olfactory receptor, family 7, subfamily A, member 10',
		'ENSG00000172148' => null,
		'ENSG00000185385' => 'olfactory receptor, family 7, subfamily A, member 17',
		'ENSG00000269552' => null,
		'ENSMUSG00000042774' => 'olfactory receptor 1353',
		'ENSMUSG00000046493' => 'olfactory receptor 1352',
		'ENSMUSG00000063216' => 'olfactory receptor 1351',
		'ENSMUSG00000062873' => 'olfactory receptor 1355',
		'ENSMUSG00000094673' => 'olfactory receptor 1354',
		'ENSMUSG00000060205' => 'olfactory receptor 57',
		'ENSMUSG00000094080' => 'olfactory receptor 8'
	),
	'gene_name_arr' => array(
		'ENSG00000127515' => 'OR7A10',
		'ENSG00000172148' => 'AC005255.6',
		'ENSG00000185385' => 'OR7A17',
		'ENSG00000269552' => 'AC005255.5',
		'ENSMUSG00000042774' => 'Olfr1353',
		'ENSMUSG00000046493' => 'Olfr1352',
		'ENSMUSG00000063216' => 'Olfr1351',
		'ENSMUSG00000062873' => 'Olfr1355',
		'ENSMUSG00000094673' => 'Olfr1354',
		'ENSMUSG00000060205' => 'Olfr57',
		'ENSMUSG00000094080' => 'Olfr8'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Bladder',
		(int) 2 => 'Brain',
		(int) 12 => 'Breast',
		(int) 15 => 'Colon',
		(int) 16 => 'Heart',
		(int) 17 => 'Kidney',
		(int) 19 => 'Liver',
		(int) 20 => 'Lung',
		(int) 22 => 'Muscle',
		(int) 23 => 'Ovary',
		(int) 24 => 'Placenta',
		(int) 27 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 16,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000248058' => array(
			'start' => '14840948',
			'end' => '14841877',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR7A10-001'
		),
		'ENST00000304105' => array(
			'start' => '14863786',
			'end' => '14864715',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AC005255.6-001'
		),
		'ENST00000327462' => array(
			'start' => '14880426',
			'end' => '14881452',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR7A17-001'
		),
		'ENST00000595427' => array(
			'start' => '14852032',
			'end' => '14852944',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AC005255.5-001'
		),
		'ENSMUST00000039718' => array(
			'start' => '78963309',
			'end' => '78970612',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1353-201'
		),
		'ENSMUST00000058991' => array(
			'start' => '78981050',
			'end' => '78984721',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1352-201'
		),
		'ENSMUST00000080730' => array(
			'start' => '79017324',
			'end' => '79018283',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1351-201'
		),
		'ENSMUST00000078414' => array(
			'start' => '78875549',
			'end' => '78880106',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1355-201'
		),
		'ENSMUST00000075859' => array(
			'start' => '78916842',
			'end' => '78917936',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1354-201'
		),
		'ENSMUST00000082244' => array(
			'start' => '79034723',
			'end' => '79035802',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr57-201'
		),
		'ENSMUST00000081571' => array(
			'start' => '78955207',
			'end' => '78956139',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr8-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_000431_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_000431_0001' => array(
		'genes_in_region' => array(
			'ENSG00000127515' => array(
				[maximum depth reached]
			),
			'ENSG00000172148' => array(
				[maximum depth reached]
			),
			'ENSG00000185385' => array(
				[maximum depth reached]
			),
			'ENSG00000269552' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Testis',
			(int) 2 => 'Testis',
			(int) 3 => 'Adipose',
			(int) 4 => 'Brain',
			(int) 5 => 'Breast',
			(int) 6 => 'Colon',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Testis',
			(int) 11 => 'Heart'
		)
	),
	'CIL_000431_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Kidney',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Kidney',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060205' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis',
			(int) 5 => 'Brain',
			(int) 6 => 'Placenta',
			(int) 7 => 'Testis'
		)
	),
	'CIL_000431_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain'
		)
	),
	'CIL_000431_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000127515' => 'olfactory receptor, family 7, subfamily A, member 10',
	'ENSG00000172148' => null,
	'ENSG00000185385' => 'olfactory receptor, family 7, subfamily A, member 17',
	'ENSG00000269552' => null,
	'ENSMUSG00000042774' => 'olfactory receptor 1353',
	'ENSMUSG00000046493' => 'olfactory receptor 1352',
	'ENSMUSG00000063216' => 'olfactory receptor 1351',
	'ENSMUSG00000062873' => 'olfactory receptor 1355',
	'ENSMUSG00000094673' => 'olfactory receptor 1354',
	'ENSMUSG00000060205' => 'olfactory receptor 57',
	'ENSMUSG00000094080' => 'olfactory receptor 8'
)
$gene_name_arr = array(
	'ENSG00000127515' => 'OR7A10',
	'ENSG00000172148' => 'AC005255.6',
	'ENSG00000185385' => 'OR7A17',
	'ENSG00000269552' => 'AC005255.5',
	'ENSMUSG00000042774' => 'Olfr1353',
	'ENSMUSG00000046493' => 'Olfr1352',
	'ENSMUSG00000063216' => 'Olfr1351',
	'ENSMUSG00000062873' => 'Olfr1355',
	'ENSMUSG00000094673' => 'Olfr1354',
	'ENSMUSG00000060205' => 'Olfr57',
	'ENSMUSG00000094080' => 'Olfr8'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0001',
			'tax_id' => '9606',
			'chromosome' => '19',
			'seq_start' => '14840948',
			'seq_end' => '14881452',
			'region_length' => '40504',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000127515-ENSG00000185385'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0002',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78963309',
			'seq_end' => '78984721',
			'region_length' => '21412',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000042774-ENSMUSG00000046493'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0003',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78981050',
			'seq_end' => '79018283',
			'region_length' => '37233',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000046493-ENSMUSG00000063216'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0004',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78875549',
			'seq_end' => '78917936',
			'region_length' => '42387',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000062873-ENSMUSG00000094673'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0005',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '79017324',
			'seq_end' => '79035802',
			'region_length' => '18478',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063216-ENSMUSG00000060205'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0006',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78955207',
			'seq_end' => '78970612',
			'region_length' => '15405',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000094080-ENSMUSG00000042774'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0007',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78916842',
			'seq_end' => '78956139',
			'region_length' => '39297',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000094673-ENSMUSG00000094080'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Bladder',
	(int) 2 => 'Brain',
	(int) 12 => 'Breast',
	(int) 15 => 'Colon',
	(int) 16 => 'Heart',
	(int) 17 => 'Kidney',
	(int) 19 => 'Liver',
	(int) 20 => 'Lung',
	(int) 22 => 'Muscle',
	(int) 23 => 'Ovary',
	(int) 24 => 'Placenta',
	(int) 27 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 16
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000248058' => array(
		'start' => '14840948',
		'end' => '14841877',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR7A10-001'
	),
	'ENST00000304105' => array(
		'start' => '14863786',
		'end' => '14864715',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AC005255.6-001'
	),
	'ENST00000327462' => array(
		'start' => '14880426',
		'end' => '14881452',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR7A17-001'
	),
	'ENST00000595427' => array(
		'start' => '14852032',
		'end' => '14852944',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AC005255.5-001'
	),
	'ENSMUST00000039718' => array(
		'start' => '78963309',
		'end' => '78970612',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1353-201'
	),
	'ENSMUST00000058991' => array(
		'start' => '78981050',
		'end' => '78984721',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1352-201'
	),
	'ENSMUST00000080730' => array(
		'start' => '79017324',
		'end' => '79018283',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1351-201'
	),
	'ENSMUST00000078414' => array(
		'start' => '78875549',
		'end' => '78880106',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1355-201'
	),
	'ENSMUST00000075859' => array(
		'start' => '78916842',
		'end' => '78917936',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1354-201'
	),
	'ENSMUST00000082244' => array(
		'start' => '79034723',
		'end' => '79035802',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr57-201'
	),
	'ENSMUST00000081571' => array(
		'start' => '78955207',
		'end' => '78956139',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr8-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_000431_0001' => array(
		'genes_in_region' => array(
			'ENSG00000127515' => array(
				[maximum depth reached]
			),
			'ENSG00000172148' => array(
				[maximum depth reached]
			),
			'ENSG00000185385' => array(
				[maximum depth reached]
			),
			'ENSG00000269552' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Testis',
			(int) 2 => 'Testis',
			(int) 3 => 'Adipose',
			(int) 4 => 'Brain',
			(int) 5 => 'Breast',
			(int) 6 => 'Colon',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Testis',
			(int) 11 => 'Heart'
		)
	),
	'CIL_000431_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Kidney',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Kidney',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060205' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis',
			(int) 5 => 'Brain',
			(int) 6 => 'Placenta',
			(int) 7 => 'Testis'
		)
	),
	'CIL_000431_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain'
		)
	),
	'CIL_000431_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_000431_0004',
		'tax_id' => '10090',
		'chromosome' => '10',
		'seq_start' => '78875549',
		'seq_end' => '78917936',
		'region_length' => '42387',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000062873-ENSMUSG00000094673'
	)
)
$gene_el = array(
	'ENSMUST00000080730' => array(
		'Brain' => array(
			'average_FPKM' => '0.017',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.006',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.042',
			'stddev_FPKM' => '0.01'
		)
	)
)
$gene_key = 'ENSMUSG00000063216'
$is_first = false
$tran_el = array(
	'Brain' => array(
		'average_FPKM' => '0.017',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.006',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.042',
		'stddev_FPKM' => '0.01'
	)
)
$tran_key = 'ENSMUST00000080730'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_000431_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000127515' => 'olfactory receptor, family 7, subfamily A, member 10',
		'ENSG00000172148' => null,
		'ENSG00000185385' => 'olfactory receptor, family 7, subfamily A, member 17',
		'ENSG00000269552' => null,
		'ENSMUSG00000042774' => 'olfactory receptor 1353',
		'ENSMUSG00000046493' => 'olfactory receptor 1352',
		'ENSMUSG00000063216' => 'olfactory receptor 1351',
		'ENSMUSG00000062873' => 'olfactory receptor 1355',
		'ENSMUSG00000094673' => 'olfactory receptor 1354',
		'ENSMUSG00000060205' => 'olfactory receptor 57',
		'ENSMUSG00000094080' => 'olfactory receptor 8'
	),
	'gene_name_arr' => array(
		'ENSG00000127515' => 'OR7A10',
		'ENSG00000172148' => 'AC005255.6',
		'ENSG00000185385' => 'OR7A17',
		'ENSG00000269552' => 'AC005255.5',
		'ENSMUSG00000042774' => 'Olfr1353',
		'ENSMUSG00000046493' => 'Olfr1352',
		'ENSMUSG00000063216' => 'Olfr1351',
		'ENSMUSG00000062873' => 'Olfr1355',
		'ENSMUSG00000094673' => 'Olfr1354',
		'ENSMUSG00000060205' => 'Olfr57',
		'ENSMUSG00000094080' => 'Olfr8'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Bladder',
		(int) 2 => 'Brain',
		(int) 12 => 'Breast',
		(int) 15 => 'Colon',
		(int) 16 => 'Heart',
		(int) 17 => 'Kidney',
		(int) 19 => 'Liver',
		(int) 20 => 'Lung',
		(int) 22 => 'Muscle',
		(int) 23 => 'Ovary',
		(int) 24 => 'Placenta',
		(int) 27 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 16,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000248058' => array(
			'start' => '14840948',
			'end' => '14841877',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR7A10-001'
		),
		'ENST00000304105' => array(
			'start' => '14863786',
			'end' => '14864715',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AC005255.6-001'
		),
		'ENST00000327462' => array(
			'start' => '14880426',
			'end' => '14881452',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR7A17-001'
		),
		'ENST00000595427' => array(
			'start' => '14852032',
			'end' => '14852944',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AC005255.5-001'
		),
		'ENSMUST00000039718' => array(
			'start' => '78963309',
			'end' => '78970612',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1353-201'
		),
		'ENSMUST00000058991' => array(
			'start' => '78981050',
			'end' => '78984721',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1352-201'
		),
		'ENSMUST00000080730' => array(
			'start' => '79017324',
			'end' => '79018283',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1351-201'
		),
		'ENSMUST00000078414' => array(
			'start' => '78875549',
			'end' => '78880106',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1355-201'
		),
		'ENSMUST00000075859' => array(
			'start' => '78916842',
			'end' => '78917936',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1354-201'
		),
		'ENSMUST00000082244' => array(
			'start' => '79034723',
			'end' => '79035802',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr57-201'
		),
		'ENSMUST00000081571' => array(
			'start' => '78955207',
			'end' => '78956139',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr8-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_000431_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000431_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_000431_0001' => array(
		'genes_in_region' => array(
			'ENSG00000127515' => array(
				[maximum depth reached]
			),
			'ENSG00000172148' => array(
				[maximum depth reached]
			),
			'ENSG00000185385' => array(
				[maximum depth reached]
			),
			'ENSG00000269552' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Testis',
			(int) 2 => 'Testis',
			(int) 3 => 'Adipose',
			(int) 4 => 'Brain',
			(int) 5 => 'Breast',
			(int) 6 => 'Colon',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Testis',
			(int) 11 => 'Heart'
		)
	),
	'CIL_000431_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Kidney',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Kidney',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060205' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis',
			(int) 5 => 'Brain',
			(int) 6 => 'Placenta',
			(int) 7 => 'Testis'
		)
	),
	'CIL_000431_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain'
		)
	),
	'CIL_000431_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000127515' => 'olfactory receptor, family 7, subfamily A, member 10',
	'ENSG00000172148' => null,
	'ENSG00000185385' => 'olfactory receptor, family 7, subfamily A, member 17',
	'ENSG00000269552' => null,
	'ENSMUSG00000042774' => 'olfactory receptor 1353',
	'ENSMUSG00000046493' => 'olfactory receptor 1352',
	'ENSMUSG00000063216' => 'olfactory receptor 1351',
	'ENSMUSG00000062873' => 'olfactory receptor 1355',
	'ENSMUSG00000094673' => 'olfactory receptor 1354',
	'ENSMUSG00000060205' => 'olfactory receptor 57',
	'ENSMUSG00000094080' => 'olfactory receptor 8'
)
$gene_name_arr = array(
	'ENSG00000127515' => 'OR7A10',
	'ENSG00000172148' => 'AC005255.6',
	'ENSG00000185385' => 'OR7A17',
	'ENSG00000269552' => 'AC005255.5',
	'ENSMUSG00000042774' => 'Olfr1353',
	'ENSMUSG00000046493' => 'Olfr1352',
	'ENSMUSG00000063216' => 'Olfr1351',
	'ENSMUSG00000062873' => 'Olfr1355',
	'ENSMUSG00000094673' => 'Olfr1354',
	'ENSMUSG00000060205' => 'Olfr57',
	'ENSMUSG00000094080' => 'Olfr8'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0001',
			'tax_id' => '9606',
			'chromosome' => '19',
			'seq_start' => '14840948',
			'seq_end' => '14881452',
			'region_length' => '40504',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000127515-ENSG00000185385'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0002',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78963309',
			'seq_end' => '78984721',
			'region_length' => '21412',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000042774-ENSMUSG00000046493'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0003',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78981050',
			'seq_end' => '79018283',
			'region_length' => '37233',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000046493-ENSMUSG00000063216'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0004',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78875549',
			'seq_end' => '78917936',
			'region_length' => '42387',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000062873-ENSMUSG00000094673'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0005',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '79017324',
			'seq_end' => '79035802',
			'region_length' => '18478',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063216-ENSMUSG00000060205'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0006',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78955207',
			'seq_end' => '78970612',
			'region_length' => '15405',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000094080-ENSMUSG00000042774'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000431_0007',
			'tax_id' => '10090',
			'chromosome' => '10',
			'seq_start' => '78916842',
			'seq_end' => '78956139',
			'region_length' => '39297',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000094673-ENSMUSG00000094080'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Bladder',
	(int) 2 => 'Brain',
	(int) 12 => 'Breast',
	(int) 15 => 'Colon',
	(int) 16 => 'Heart',
	(int) 17 => 'Kidney',
	(int) 19 => 'Liver',
	(int) 20 => 'Lung',
	(int) 22 => 'Muscle',
	(int) 23 => 'Ovary',
	(int) 24 => 'Placenta',
	(int) 27 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 16
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000248058' => array(
		'start' => '14840948',
		'end' => '14841877',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR7A10-001'
	),
	'ENST00000304105' => array(
		'start' => '14863786',
		'end' => '14864715',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AC005255.6-001'
	),
	'ENST00000327462' => array(
		'start' => '14880426',
		'end' => '14881452',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR7A17-001'
	),
	'ENST00000595427' => array(
		'start' => '14852032',
		'end' => '14852944',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AC005255.5-001'
	),
	'ENSMUST00000039718' => array(
		'start' => '78963309',
		'end' => '78970612',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1353-201'
	),
	'ENSMUST00000058991' => array(
		'start' => '78981050',
		'end' => '78984721',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1352-201'
	),
	'ENSMUST00000080730' => array(
		'start' => '79017324',
		'end' => '79018283',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1351-201'
	),
	'ENSMUST00000078414' => array(
		'start' => '78875549',
		'end' => '78880106',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1355-201'
	),
	'ENSMUST00000075859' => array(
		'start' => '78916842',
		'end' => '78917936',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1354-201'
	),
	'ENSMUST00000082244' => array(
		'start' => '79034723',
		'end' => '79035802',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr57-201'
	),
	'ENSMUST00000081571' => array(
		'start' => '78955207',
		'end' => '78956139',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr8-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_000431_0001' => array(
		'genes_in_region' => array(
			'ENSG00000127515' => array(
				[maximum depth reached]
			),
			'ENSG00000172148' => array(
				[maximum depth reached]
			),
			'ENSG00000185385' => array(
				[maximum depth reached]
			),
			'ENSG00000269552' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Testis',
			(int) 2 => 'Testis',
			(int) 3 => 'Adipose',
			(int) 4 => 'Brain',
			(int) 5 => 'Breast',
			(int) 6 => 'Colon',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Testis',
			(int) 11 => 'Heart'
		)
	),
	'CIL_000431_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Kidney',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000046493' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Kidney',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis'
		)
	),
	'CIL_000431_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060205' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063216' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis',
			(int) 5 => 'Brain',
			(int) 6 => 'Placenta',
			(int) 7 => 'Testis'
		)
	),
	'CIL_000431_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000042774' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Testis',
			(int) 3 => 'Brain'
		)
	),
	'CIL_000431_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_000431_0004',
		'tax_id' => '10090',
		'chromosome' => '10',
		'seq_start' => '78875549',
		'seq_end' => '78917936',
		'region_length' => '42387',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000062873-ENSMUSG00000094673'
	)
)
$gene_el = array(
	'ENSMUST00000080730' => array(
		'Brain' => array(
			'average_FPKM' => '0.017',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.006',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.042',
			'stddev_FPKM' => '0.01'
		)
	)
)
$gene_key = 'ENSMUSG00000063216'
$is_first = false
$tran_el = array(
	'Brain' => array(
		'average_FPKM' => '0.017',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.006',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.042',
		'stddev_FPKM' => '0.01'
	)
)
$tran_key = 'ENSMUST00000080730'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000062873-ENSMUSG00000094673		CGP	10090	10:78875549-78917936
Gene		Transcript	Position	Biotype