C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074444-ENSDARG00000052666 CGP 7955 3:42774867-42784137
GeneTranscriptPositionBiotype
ENSDARG00000052666 (litaf)
lipopolysaccharide-induced TNF factor 		ENSDART00000074561 (litaf-001) 42778892-42784137 protein_coding
ENSDART00000142639 (litaf-002) 42780193-42783904 protein_coding
ENSDART00000143344 (litaf-003) 42783402-42783903 protein_coding
CIL_00043Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037991-ENSMUSG00000022500 CGP 10090 16:10835059-11066157
GeneTranscriptPositionBiotype
ENSMUSG00000022500 (Litaf)
LPS-induced TN factor 		ENSMUST00000023143 (Litaf-001) 10959275-10993121 protein_coding
ENSMUST00000117360 (Litaf-002) 10960824-10975579 protein_coding
ENSMUST00000140170 (Litaf-003) 10966331-10993071 retained_intron
ENSMUST00000162323 (Litaf-004) 10963343-11066157 protein_coding
ENSMUSG00000037991 (Rmi2)
RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae) 		ENSMUST00000037913 (Rmi2-002) 10835059-10843238 protein_coding
ENSMUST00000181721 (Rmi2-001) 10835068-10892966 nonsense_mediated_decay
ENSMUSG00000093897 (Gm26268)
predicted gene, 26268 		ENSMUST00000177685 (Gm26268-201) 10965724-10965849 miRNA
ENSMUSG00000095369 (Gm21859)
predicted gene, 21859 		ENSMUST00000178424 (Gm21859-001) 10912012-10914797 lincRNA
ENSMUSG00000097056 (Gm4262)
predicted gene 4262 		ENSMUST00000180624 (Gm4262-201) 11008898-11015186 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043Q_0001ENSDARG00000052666ENSDART00000074561ENSDART00000142639ENSDART00000143344CIL_00043Q_0002ENSMUSG00000022500ENSMUST00000023143ENSMUST00000117360ENSMUST00000140170ENSMUST00000162323ENSMUSG00000037991ENSMUST00000037913ENSMUST00000181721ENSMUSG00000093897ENSMUST00000177685ENSMUSG00000095369ENSMUST00000178424ENSMUSG00000097056ENSMUST00000180624
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043Q_0001ENSDARG00000052666ENSDART00000074561ENSDART00000142639CIL_00043Q_0002ENSMUSG00000022500ENSMUST00000023143ENSMUST00000117360ENSMUSG00000037991ENSMUST00000037913ENSMUST00000181721ENSMUSG00000093897ENSMUST00000177685ENSMUSG00000095369ENSMUST00000178424ENSMUSG00000097056ENSMUST00000180624
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000052666 ENSDART00000074561 N/A N/A N/A 4.935±2.68 N/A N/A 11.751±2.77 8.006±2.82 0.365±0.00 N/A 10.278±0.00 N/A N/A N/A
ENSDART00000142639 N/A N/A N/A 3.966±0.73 N/A N/A 27.216±0.00 N/A 1.759±0.00 N/A 15.517±0.00 N/A N/A N/A
ENSDART00000143344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022500 ENSMUST00000023143 49.514±15.42 17.865±3.38 16.351±0.87 3.904±2.38 40.396±6.50 67.678±16.54 7.474±3.16 26.099±1.89 21.721±10.65 41.621±5.82 1.504±0.39 45.315±17.28 34.390±19.95 4.714±1.95
ENSMUST00000117360 26.338±3.03 62.933±2.51 N/A 1.501±0.00 39.437±4.14 113.404±21.31 5.219±0.00 13.301±3.20 28.944±10.78 17.410±4.38 N/A 49.852±12.19 N/A N/A
ENSMUST00000140170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037991 ENSMUST00000037913 0.328±0.25 0.593±0.15 0.265±0.10 0.684±0.34 0.651±0.27 1.345±0.27 0.208±0.04 0.150±0.06 1.368±1.46 0.301±0.02 0.673±0.20 1.004±0.50 0.781±0.61 0.872±0.41
ENSMUST00000181721 0.044±0.00 1.103±0.42 N/A N/A 0.933±0.00 1.092±0.53 N/A 0.071±0.00 N/A 0.290±0.02 N/A 2.271±0.82 N/A N/A
ENSMUSG00000093897 ENSMUST00000177685 N/A N/A 81.276±62.07 143.696±0.00 N/A N/A N/A N/A 88.539±30.42 N/A N/A N/A 7.970±0.00 N/A
ENSMUSG00000095369 ENSMUST00000178424 0.074±0.04 0.126±0.04 0.029±0.00 0.023±0.00 0.113±0.08 0.099±0.03 0.031±0.00 0.076±0.03 0.027±0.02 0.070±0.03 0.049±0.00 0.129±0.05 0.100±0.04 N/A
ENSMUSG00000097056 ENSMUST00000180624 0.351±0.08 0.071±0.02 0.525±0.20 0.318±0.37 0.143±0.05 1.026±0.34 0.073±0.03 0.115±0.08 0.137±0.10 0.903±0.14 0.044±0.01 1.093±0.33 0.511±0.26 0.113±0.05

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