C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068257-ENSDARG00000017470 CGP 7955 15:41811205-41875056
GeneTranscriptPositionBiotype
ENSDARG00000017470 (scg2a)
secretogranin II (chromogranin C) a 		ENSDART00000003653 (scg2a-201) 41873434-41875056 protein_coding
ENSDARG00000068257 (kcne4)
potassium voltage-gated channel, Isk-related family, member 4 		ENSDART00000098621 (kcne4-201) 41815123-41815623 protein_coding
ENSDART00000141125 (kcne4-001) 41811205-41818560 protein_coding
ENSDARG00000098028 (si:dkeyp-109h9.4)
si:dkeyp-109h9.4 		ENSDART00000156462 (si:dkeyp-109h9.4-001) 41792084-41837352 antisense

Danio rerio Ensembl (Zv9)

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CIL_0004AL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152049-ENSG00000171951 CGP 9606 2:223051814-223602503
GeneTranscriptPositionBiotype
ENSG00000152049 (KCNE4)
potassium voltage-gated channel, Isk-related family, member 4 		ENST00000281830 (KCNE4-001) 223051814-223055637 protein_coding
ENST00000488477 (KCNE4-002) 223052200-223198399 processed_transcript
ENSG00000171951 (SCG2)
secretogranin II 		ENST00000305409 (SCG2-001) 223596940-223602503 protein_coding
ENST00000421386 (SCG2-003) 223598851-223602284 protein_coding
ENST00000433889 (SCG2-002) 223598906-223602361 protein_coding
ENSG00000231189 (AC013448.1)
 ENST00000422118 (AC013448.1-001) 223498773-223504611 lincRNA
ENSG00000235610 (AC013448.2)
 ENST00000440341 (AC013448.2-001) 223505476-223510933 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004AL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047330-ENSMUSG00000050711 CGP 10090 1:78816758-79440120
GeneTranscriptPositionBiotype
ENSMUSG00000047330 (Kcne4)
potassium voltage-gated channel, Isk-related subfamily, gene 4 		ENSMUST00000057262 (Kcne4-001) 78816758-78820028 protein_coding
ENSMUST00000187432 (Kcne4-002) 78816927-78820028 protein_coding
ENSMUSG00000050711 (Scg2)
secretogranin II 		ENSMUST00000049972 (Scg2-001) 79434669-79440120 protein_coding
ENSMUST00000185234 (Scg2-002) 79434669-79440042 protein_coding
ENSMUSG00000072978 (Gm5830)
predicted pseudogene 5830 		ENSMUST00000049117 (Gm5830-001) 78967637-78968079 processed_pseudogene
ENSMUSG00000099706 (RP23-421G18.1)
predicted gene 29536 		ENSMUST00000189296 (RP23-421G18.1-001) 78791623-79224511 lincRNA
ENSMUSG00000101324 (RP23-395H12.3)
predicted gene 29187 		ENSMUST00000186681 (RP23-395H12.3-001) 78821258-78822652 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AL_0001ENSDARG00000017470ENSDART00000003653ENSDARG00000068257ENSDART00000098621ENSDART00000141125ENSDARG00000098028ENSDART00000156462CIL_0004AL_0002ENSG00000152049ENST00000281830ENST00000488477ENSG00000171951ENST00000305409ENST00000421386ENST00000433889ENSG00000231189ENST00000422118ENSG00000235610ENST00000440341CIL_0004AL_0003ENSMUSG00000047330ENSMUST00000057262ENSMUST00000187432ENSMUSG00000050711ENSMUST00000049972ENSMUST00000185234ENSMUSG00000072978ENSMUST00000049117ENSMUSG00000099706ENSMUST00000189296ENSMUSG00000101324ENSMUST00000186681
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AL_0001ENSDARG00000017470ENSDART00000003653ENSDARG00000068257ENSDART00000098621ENSDART00000141125ENSDARG00000098028ENSDART00000156462CIL_0004AL_0002ENSG00000152049ENST00000281830ENST00000488477ENSG00000171951ENST00000305409ENST00000421386ENST00000433889ENSG00000231189ENST00000422118ENSG00000235610ENST00000440341CIL_0004AL_0003ENSMUSG00000047330ENSMUST00000057262ENSMUST00000187432ENSMUSG00000050711ENSMUST00000049972ENSMUST00000185234ENSMUSG00000072978ENSMUST00000049117ENSMUSG00000099706ENSMUST00000189296ENSMUSG00000101324ENSMUST00000186681
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017470 ENSDART00000003653 N/A N/A N/A 49.445±31.88 N/A N/A 0.151±0.00 2.224±0.00 0.199±0.00 N/A 1.675±0.00 N/A N/A N/A
ENSDARG00000068257 ENSDART00000098621 N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A 0.639±0.00 N/A 9.806±0.00 N/A N/A N/A
ENSDART00000141125 N/A N/A N/A 1.372±0.47 N/A N/A 4.727±2.50 1.011±0.25 0.029±0.00 N/A 5.373±0.00 N/A N/A N/A
ENSDARG00000098028 ENSDART00000156462 N/A N/A N/A N/A N/A N/A 14.337±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152049 ENST00000281830 4.076±0.00 9.481±0.00 1.068±0.00 1.211±0.67 2.309±0.32 2.504±1.72 1.495±1.14 1.252±1.23 4.107±3.92 1.035±0.38 1.073±0.24 3.909±1.38 2.966±0.13 4.019±3.34
ENST00000488477 N/A N/A N/A 1.174±1.06 1.318±0.00 N/A 0.731±0.65 1.528±0.00 0.719±0.00 0.862±0.00 N/A N/A N/A 1.353±0.00
ENSG00000171951 ENST00000305409 0.996±0.00 0.032±0.00 0.056±0.00 24.735±14.07 0.736±0.69 3.869±3.08 0.048±0.02 0.117±0.09 0.077±0.00 0.198±0.17 0.021±0.01 1.024±0.60 0.271±0.14 0.192±0.06
ENST00000421386 N/A N/A N/A N/A N/A 0.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433889 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.00 N/A N/A N/A N/A
ENSG00000231189 ENST00000422118 0.368±0.00 0.708±0.00 N/A 0.551±0.00 0.977±0.00 0.263±0.20 0.156±0.00 0.541±0.00 0.119±0.00 0.115±0.09 0.015±0.00 0.107±0.05 0.052±0.00 0.538±0.11
ENSG00000235610 ENST00000440341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047330 ENSMUST00000057262 3.733±2.84 0.948±0.14 7.815±0.77 0.228±0.05 0.611±0.26 0.810±0.13 0.576±0.05 1.255±0.27 0.074±0.03 1.058±0.39 0.419±0.12 3.040±1.16 1.072±1.09 0.597±0.28
ENSMUST00000187432 1.400±0.00 0.635±0.23 1.478±0.00 0.221±0.00 0.528±0.07 0.371±0.09 0.288±0.00 0.406±0.02 0.059±0.04 0.288±0.00 0.351±0.17 1.220±0.58 0.385±0.27 0.081±0.00
ENSMUSG00000050711 ENSMUST00000049972 N/A 12.362±2.93 0.131±0.01 8.220±1.99 N/A 0.459±0.19 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A
ENSMUST00000185234 0.038±0.02 16.614±5.87 0.069±0.00 39.737±44.66 0.036±0.00 1.497±0.31 0.022±0.01 0.083±0.03 0.028±0.02 0.038±0.02 0.017±0.01 0.123±0.05 0.019±0.01 0.157±0.14
ENSMUSG00000072978 ENSMUST00000049117 0.123±0.00 N/A 0.505±0.19 0.282±0.01 N/A N/A N/A 0.139±0.01 0.182±0.09 N/A N/A 0.158±0.00 0.113±0.13 0.128±0.00
ENSMUSG00000099706 ENSMUST00000189296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.01
ENSMUSG00000101324 ENSMUST00000186681 0.087±0.04 N/A 0.153±0.07 N/A N/A N/A N/A N/A 0.011±0.00 N/A 0.043±0.00 0.170±0.04 0.091±0.08 0.055±0.00

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