C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040315-ENSDARG00000061031 CGP 7955 18:45037508-45172139
GeneTranscriptPositionBiotype
ENSDARG00000040315 (pid1)
phosphotyrosine interaction domain containing 1 		ENSDART00000122194 (pid1-201) 45037508-45093325 protein_coding
ENSDARG00000061031 (dner)
delta/notch-like EGF repeat containing 		ENSDART00000086576 (dner-201) 45108870-45172139 protein_coding
CIL_0004AT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153823-ENSG00000187957 CGP 9606 2:228850526-229714558
GeneTranscriptPositionBiotype
ENSG00000153823 (PID1)
phosphotyrosine interaction domain containing 1 		ENST00000354069 (PID1-005) 229025577-229232085 protein_coding
ENST00000392054 (PID1-004) 229023974-229271265 protein_coding
ENST00000392055 (PID1-001) 229023995-229271285 protein_coding
ENST00000409462 (PID1-002) 229023989-229271280 protein_coding
ENST00000482518 (PID1-003) 228850526-229245060 processed_transcript
ENST00000534952 (PID1-006) 229026036-229271239 nonsense_mediated_decay
ENSG00000187957 (DNER)
delta/notch-like EGF repeat containing 		ENST00000341772 (DNER-001) 229357629-229714558 protein_coding
ENST00000482831 (DNER-002) 229580154-229587177 processed_transcript
ENSG00000235993 (AC007559.1)
 ENST00000428736 (AC007559.1-001) 229701794-229702148 processed_pseudogene
ENSG00000253006 (RN7SKP283)
RNA, 7SK small nuclear pseudogene 283 		ENST00000517197 (RN7SKP283-201) 229236340-229236609 misc_RNA
CIL_0004AT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045658-ENSMUSG00000036766 CGP 10090 1:84036296-84696221
GeneTranscriptPositionBiotype
ENSMUSG00000036766 (Dner)
delta/notch-like EGF-related receptor 		ENSMUST00000049126 (Dner-001) 84369839-84696221 protein_coding
ENSMUST00000185606 (Dner-003) 84580715-84640485 protein_coding
ENSMUST00000191306 (Dner-002) 84533944-84696019 retained_intron
ENSMUST00000191546 (Dner-004) 84583004-84623841 protein_coding
ENSMUSG00000045658 (Pid1)
phosphotyrosine interaction domain containing 1 		ENSMUST00000168574 (Pid1-001) 84036296-84284645 protein_coding
ENSMUST00000175948 (Pid1-007) 84037926-84053253 processed_transcript
ENSMUST00000175996 (Pid1-006) 84107794-84364180 protein_coding
ENSMUST00000176559 (Pid1-004) 84037231-84336173 protein_coding
ENSMUST00000176720 (Pid1-005) 84080579-84284423 protein_coding
ENSMUST00000176822 (Pid1-003) 84115332-84341110 protein_coding
ENSMUST00000177458 (Pid1-002) 84157129-84284611 protein_coding
ENSMUST00000187992 (Pid1-008) 84283193-84284623 retained_intron
ENSMUSG00000098851 (Mir6353)
microRNA 6353 		ENSMUST00000183596 (Mir6353-201) 84218849-84218961 miRNA
ENSMUSG00000101934 (RP23-237M24.1)
predicted gene, 18304 		ENSMUST00000189162 (RP23-237M24.1-001) 84168188-84168733 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AT_0001ENSDARG00000040315ENSDART00000122194ENSDARG00000061031ENSDART00000086576CIL_0004AT_0002ENSG00000153823ENST00000354069ENST00000392054ENST00000392055ENST00000409462ENST00000482518ENST00000534952ENSG00000187957ENST00000341772ENST00000482831ENSG00000235993ENST00000428736ENSG00000253006ENST00000517197CIL_0004AT_0003ENSMUSG00000036766ENSMUST00000049126ENSMUST00000185606ENSMUST00000191306ENSMUST00000191546ENSMUSG00000045658ENSMUST00000168574ENSMUST00000175948ENSMUST00000175996ENSMUST00000176559ENSMUST00000176720ENSMUST00000176822ENSMUST00000177458ENSMUST00000187992ENSMUSG00000098851ENSMUST00000183596ENSMUSG00000101934ENSMUST00000189162
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AT_0001ENSDARG00000040315ENSDART00000122194ENSDARG00000061031ENSDART00000086576CIL_0004AT_0002ENSG00000153823ENST00000354069ENST00000392054ENST00000392055ENST00000409462ENSG00000187957ENST00000341772ENST00000482831ENSG00000235993ENST00000428736ENSG00000253006ENST00000517197CIL_0004AT_0003ENSMUSG00000036766ENSMUST00000049126ENSMUST00000185606ENSMUST00000191306ENSMUSG00000045658ENSMUST00000168574ENSMUST00000175948ENSMUST00000175996ENSMUST00000176559ENSMUST00000187992ENSMUSG00000098851ENSMUST00000183596ENSMUSG00000101934ENSMUST00000189162
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040315 ENSDART00000122194 N/A N/A N/A 12.706±6.15 N/A N/A 1.619±0.82 1.289±0.21 0.489±0.00 N/A 2.318±0.00 N/A N/A N/A
ENSDARG00000061031 ENSDART00000086576 N/A N/A N/A N/A N/A N/A 0.027±0.00 0.087±0.00 0.033±0.00 N/A 2.840±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153823 ENST00000354069 N/A N/A N/A N/A N/A 4.555±0.00 N/A 5.805±0.00 N/A 5.379±0.00 N/A 1.348±0.00 6.044±0.00 1.923±0.00
ENST00000392054 N/A 0.796±0.00 0.130±0.00 N/A N/A N/A N/A 1.366±0.00 N/A N/A 0.502±0.00 N/A N/A N/A
ENST00000392055 6.330±0.00 3.744±0.00 0.093±0.00 3.109±1.05 2.989±1.58 18.047±0.00 2.121±1.76 2.732±0.09 18.600±14.88 3.670±2.10 3.463±0.00 7.159±4.87 12.003±3.00 3.753±2.44
ENST00000409462 4.476±0.00 1.983±0.00 0.552±0.00 4.392±0.49 5.297±0.00 21.145±0.00 1.177±0.43 1.761±0.04 1.316±0.00 N/A 0.383±0.00 2.370±1.28 2.492±0.00 6.330±0.00
ENST00000482518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187957 ENST00000341772 0.197±0.00 0.004±0.00 0.623±0.00 39.084±24.55 0.222±0.00 2.214±2.14 0.334±0.28 14.375±0.00 0.072±0.03 1.106±0.89 0.348±0.00 0.168±0.00 0.557±0.04 0.391±0.30
ENST00000482831 N/A N/A N/A N/A 0.134±0.00 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235993 ENST00000428736 N/A N/A N/A 0.342±0.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253006 ENST00000517197 N/A N/A N/A N/A N/A N/A N/A N/A 1.753±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036766 ENSMUST00000049126 0.175±0.13 2.241±0.53 7.894±0.04 50.261±33.12 0.093±0.06 3.084±0.37 0.072±0.03 0.151±0.05 0.034±0.04 0.914±0.20 0.024±0.02 2.248±1.75 0.038±0.03 0.379±0.15
ENSMUST00000185606 N/A N/A N/A N/A N/A N/A 0.219±0.03 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191306 N/A 2.345±0.66 N/A N/A 0.012±0.00 0.710±0.00 0.031±0.01 0.131±0.00 N/A N/A N/A 1.191±0.77 N/A 0.018±0.00
ENSMUST00000191546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045658 ENSMUST00000168574 10.814±0.75 6.385±1.16 28.084±0.97 8.445±1.64 9.262±2.15 6.051±0.84 2.482±0.78 3.166±0.58 21.765±15.74 16.135±2.43 1.074±0.16 15.350±6.65 3.213±1.82 0.540±0.27
ENSMUST00000175948 N/A N/A N/A N/A 4.772±0.00 N/A 2.233±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00
ENSMUST00000176559 7.258±1.64 N/A 6.735±0.00 4.029±1.33 3.466±0.31 N/A 1.028±0.23 1.230±0.39 1.295±0.00 5.386±0.91 N/A N/A 1.777±0.45 0.266±0.13
ENSMUST00000176720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187992 N/A 14.567±2.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.447±0.00 N/A N/A
ENSMUSG00000098851 ENSMUST00000183596 N/A N/A N/A N/A N/A N/A N/A N/A 19.049±0.00 N/A N/A N/A N/A 46.597±0.00
ENSMUSG00000101934 ENSMUST00000189162 0.093±0.00 N/A 0.123±0.00 0.115±0.00 N/A N/A 0.262±0.00 N/A 0.141±0.16 0.110±0.00 N/A 0.235±0.17 N/A N/A

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