C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004G9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105364-ENSG00000090339 CGP 9606 19:10251901-10286615
GeneTranscriptPositionBiotype
ENSG00000090339 (ICAM1)
intercellular adhesion molecule 1 		ENST00000264832 (ICAM1-001) 10270835-10286615 protein_coding
ENST00000423829 (ICAM1-002) 10271093-10285583 protein_coding
ENST00000585443 (ICAM1-005) 10282258-10283586 processed_transcript
ENST00000588645 (ICAM1-004) 10271120-10283753 protein_coding
ENST00000592686 (ICAM1-006) 10283282-10284098 retained_intron
ENSG00000105364 (MRPL4)
mitochondrial ribosomal protein L4 		ENST00000253099 (MRPL4-001) 10251967-10260045 protein_coding
ENST00000307422 (MRPL4-201) 10251964-10260043 protein_coding
ENST00000393733 (MRPL4-003) 10252227-10260025 protein_coding
ENST00000588502 (MRPL4-010) 10252276-10258623 protein_coding
ENST00000588963 (MRPL4-005) 10252305-10253029 retained_intron
ENST00000590150 (MRPL4-009) 10251998-10258234 protein_coding
ENST00000590669 (MRPL4-002) 10252010-10259125 protein_coding
ENST00000590702 (MRPL4-008) 10254620-10259042 protein_coding
ENST00000591054 (MRPL4-007) 10251944-10258667 nonsense_mediated_decay
ENST00000592071 (MRPL4-004) 10252258-10255717 retained_intron
ENST00000592514 (MRPL4-006) 10251901-10259778 protein_coding
ENSG00000267607 (CTD-2369P2.8)
 ENST00000589379 (CTD-2369P2.8-001) 10285801-10289019 antisense
CIL_0004G9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003299-ENSMUSG00000037405 CGP 10090 9:21002737-21028797
GeneTranscriptPositionBiotype
ENSMUSG00000003299 (Mrpl4)
mitochondrial ribosomal protein L4 		ENSMUST00000003386 (Mrpl4-201) 21002737-21008835 protein_coding
ENSMUSG00000037405 (Icam1)
intercellular adhesion molecule 1 		ENSMUST00000086399 (Icam1-201) 21015960-21028797 protein_coding
ENSMUSG00000097432 (Gm20603)
predicted gene 20603 		ENSMUST00000181169 (Gm20603-201) 21028307-21032357 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004G9_0001ENSG00000090339ENST00000264832ENST00000423829ENST00000585443ENST00000588645ENST00000592686ENSG00000105364ENST00000253099ENST00000307422ENST00000393733ENST00000588502ENST00000588963ENST00000590150ENST00000590669ENST00000590702ENST00000591054ENST00000592071ENST00000592514ENSG00000267607ENST00000589379CIL_0004G9_0002ENSMUSG00000003299ENSMUST00000003386ENSMUSG00000037405ENSMUST00000086399ENSMUSG00000097432ENSMUST00000181169
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004G9_0001ENSG00000090339ENST00000264832ENST00000423829ENSG00000105364ENST00000253099ENST00000307422ENST00000588502ENST00000590669ENST00000592514ENSG00000267607ENST00000589379CIL_0004G9_0002ENSMUSG00000003299ENSMUST00000003386ENSMUSG00000037405ENSMUST00000086399ENSMUSG00000097432ENSMUST00000181169
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090339 ENST00000264832 N/A N/A N/A N/A 2.538±1.31 0.930±0.00 2.898±0.00 N/A 2.767±0.00 8.015±0.00 N/A 7.732±4.99 8.586±2.10 1.673±0.00
ENST00000423829 10.526±0.00 40.117±0.00 2.750±0.00 1.600±0.00 8.106±1.82 5.927±2.64 1.560±0.00 3.284±0.00 3.899±0.00 131.381±114.97 1.243±0.00 N/A 11.795±0.00 4.647±0.00
ENST00000585443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105364 ENST00000253099 N/A N/A N/A 3.084±0.00 N/A 2.804±0.00 N/A 6.469±0.00 N/A N/A N/A N/A 21.619±0.00 N/A
ENST00000307422 N/A N/A N/A N/A 12.194±0.00 N/A 12.272±0.00 N/A 29.826±0.00 N/A 14.059±0.00 33.145±0.00 23.001±1.87 13.945±0.00
ENST00000393733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588502 N/A N/A 5.114±0.00 N/A N/A 2.738±0.00 N/A N/A N/A N/A N/A 6.248±0.00 N/A N/A
ENST00000588963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590669 N/A N/A N/A 2.642±0.00 N/A N/A N/A N/A N/A N/A 3.191±0.00 N/A N/A N/A
ENST00000590702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592514 17.892±0.00 N/A N/A 14.604±9.29 10.407±5.80 18.351±0.00 9.666±5.31 30.974±0.00 N/A N/A 6.816±0.00 38.064±9.05 19.772±0.00 13.466±3.56
ENSG00000267607 ENST00000589379 7.123±0.00 23.774±0.00 N/A 5.554±0.00 4.739±0.00 5.213±0.00 3.272±0.00 8.475±0.00 7.060±0.00 143.915±0.00 4.539±0.00 7.466±1.40 6.123±1.67 3.363±1.87
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003299 ENSMUST00000003386 43.042±7.74 87.398±5.87 36.689±0.42 20.277±3.11 36.785±13.87 31.432±1.44 67.895±19.04 72.120±7.32 25.085±5.76 40.375±2.13 28.485±0.74 37.195±10.17 35.223±11.33 14.963±6.49
ENSMUSG00000037405 ENSMUST00000086399 10.965±1.80 3.928±1.41 9.191±2.48 1.188±0.15 20.443±7.72 5.444±0.70 4.163±0.69 9.570±0.73 4.644±1.63 181.493±10.34 0.828±0.41 8.785±2.24 7.944±2.02 0.724±0.28
ENSMUSG00000097432 ENSMUST00000181169 1.357±0.42 N/A 1.660±0.10 N/A 2.375±0.79 N/A 0.640±0.11 1.409±0.14 1.334±0.98 N/A 0.217±0.09 1.134±0.04 1.453±0.23 N/A

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