C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000103995-ENSG00000185634 CGP 9606 15:48712928-48963444
GeneTranscriptPositionBiotype
ENSG00000103995 (CEP152)
centrosomal protein 152kDa 		ENST00000325747 (CEP152-003) 48740506-48811030 protein_coding
ENST00000380950 (CEP152-001) 48737935-48811141 protein_coding
ENST00000399334 (CEP152-004) 48738151-48810987 protein_coding
ENST00000558337 (CEP152-008) 48783983-48789322 processed_transcript
ENST00000558591 (CEP152-007) 48797717-48810594 protein_coding
ENST00000559398 (CEP152-009) 48768973-48773531 processed_transcript
ENST00000559444 (CEP152-006) 48797671-48811079 retained_intron
ENST00000559630 (CEP152-005) 48805520-48811076 retained_intron
ENST00000560322 (CEP152-002) 48772515-48811146 non_stop_decay
ENST00000561245 (CEP152-010) 48712928-48742014 nonsense_mediated_decay
ENSG00000185634 (SHC4)
SHC (Src homology 2 domain containing) family, member 4 		ENST00000332408 (SHC4-001) 48823735-48963444 protein_coding
ENST00000396535 (SHC4-003) 48825167-48877489 protein_coding
ENST00000537958 (SHC4-002) 48825779-48878054 protein_coding
ENST00000557797 (SHC4-005) 48834846-48877629 nonsense_mediated_decay
ENST00000558220 (SHC4-004) 48855953-48878050 protein_coding
ENST00000559289 (SHC4-006) 48872013-48877281 retained_intron
ENSG00000255302 (EID1)
EP300 interacting inhibitor of differentiation 1 		ENST00000530028 (EID1-001) 48877886-48880183 protein_coding
ENST00000558295 (EID1-004) 48878136-48879459 processed_transcript
ENST00000560490 (EID1-003) 48878136-48878785 protein_coding
ENSG00000259216 (RP11-227D13.2)
 ENST00000559987 (RP11-227D13.2-001) 48725338-48725827 processed_pseudogene
ENSG00000259469 (RP11-227D13.4)
 ENST00000559165 (RP11-227D13.4-001) 48729080-48729844 lincRNA
ENSG00000259602 (RP11-138E16.1)
 ENST00000559620 (RP11-138E16.1-001) 48938236-48948031 antisense
ENSG00000259670 (RP11-485O10.2)
 ENST00000558304 (RP11-485O10.2-001) 48783190-48784121 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004NF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000068394-ENSMUSG00000035109 CGP 10090 2:125563088-125724148
GeneTranscriptPositionBiotype
ENSMUSG00000035109 (Shc4)
SHC (Src homology 2 domain containing) family, member 4 		ENSMUST00000042246 (Shc4-001) 125627447-125723387 protein_coding
ENSMUST00000110477 (Shc4-003) 125629065-125673502 protein_coding
ENSMUST00000110480 (Shc4-002) 125627447-125673632 protein_coding
ENSMUST00000157002 (Shc4-004) 125691910-125724148 retained_intron
ENSMUSG00000068394 (Cep152)
centrosomal protein 152 		ENSMUST00000089776 (Cep152-001) 125563088-125625113 protein_coding
ENSMUSG00000091337 (Eid1)
EP300 interacting inhibitor of differentiation 1 		ENSMUST00000164756 (Eid1-001) 125673095-125674785 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NF_0001ENSG00000103995ENST00000325747ENST00000380950ENST00000399334ENST00000558337ENST00000558591ENST00000559398ENST00000559444ENST00000559630ENST00000560322ENST00000561245ENSG00000185634ENST00000332408ENST00000396535ENST00000537958ENST00000557797ENST00000558220ENST00000559289ENSG00000255302ENST00000530028ENST00000558295ENST00000560490ENSG00000259216ENST00000559987ENSG00000259469ENST00000559165ENSG00000259602ENST00000559620ENSG00000259670ENST00000558304CIL_0004NF_0002ENSMUSG00000035109ENSMUST00000042246ENSMUST00000110477ENSMUST00000110480ENSMUST00000157002ENSMUSG00000068394ENSMUST00000089776ENSMUSG00000091337ENSMUST00000164756
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NF_0001ENSG00000103995ENST00000325747ENST00000380950ENST00000399334ENST00000559444ENST00000559630ENST00000560322ENST00000561245ENSG00000185634ENST00000332408ENSG00000255302ENST00000530028ENST00000560490ENSG00000259216ENST00000559987ENSG00000259469ENST00000559165ENSG00000259602ENST00000559620ENSG00000259670ENST00000558304CIL_0004NF_0002ENSMUSG00000035109ENSMUST00000042246ENSMUST00000110480ENSMUSG00000068394ENSMUST00000089776ENSMUSG00000091337ENSMUST00000164756
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103995 ENST00000325747 0.054±0.00 0.270±0.00 N/A 0.107±0.00 N/A 0.431±0.00 0.068±0.02 N/A 0.314±0.00 1.028±0.00 N/A 0.625±0.14 0.279±0.22 1.197±0.21
ENST00000380950 0.218±0.00 N/A N/A N/A 0.083±0.00 0.361±0.15 0.029±0.00 0.198±0.08 0.228±0.20 0.053±0.00 0.031±0.00 0.198±0.06 0.080±0.01 1.480±0.00
ENST00000399334 0.073±0.00 N/A N/A 0.075±0.00 0.125±0.00 N/A N/A N/A N/A N/A 0.007±0.00 N/A 0.054±0.00 2.329±0.00
ENST00000558337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559444 N/A N/A 3.449±0.00 N/A 2.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559630 N/A N/A N/A 2.629±0.00 N/A N/A 5.756±0.00 N/A 9.299±0.00 15.043±0.00 N/A 22.517±0.00 N/A N/A
ENST00000560322 N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.061±0.00 0.914±0.00 N/A N/A
ENST00000561245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A N/A
ENSG00000185634 ENST00000332408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.368±0.00
ENST00000396535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255302 ENST00000530028 10.250±0.00 N/A 14.979±0.00 68.411±0.00 21.106±0.00 16.955±5.38 19.349±4.48 13.667±6.86 25.777±22.57 17.844±9.56 7.669±3.40 29.512±16.24 18.942±3.84 14.159±7.16
ENST00000558295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560490 72.222±0.00 104.809±0.00 N/A 205.687±0.00 81.981±0.00 84.606±0.00 N/A N/A N/A N/A N/A 165.542±38.17 219.106±0.00 123.256±0.00
ENSG00000259216 ENST00000559987 N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A 0.144±0.00 0.023±0.00 0.134±0.00 1.193±0.00 N/A N/A
ENSG00000259469 ENST00000559165 0.217±0.00 0.255±0.00 N/A 0.090±0.00 0.588±0.00 0.126±0.00 N/A 0.157±0.00 N/A 0.183±0.00 N/A 0.054±0.02 N/A 0.281±0.13
ENSG00000259602 ENST00000559620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.15
ENSG00000259670 ENST00000558304 N/A N/A N/A N/A N/A N/A N/A N/A 0.484±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035109 ENSMUST00000042246 N/A N/A N/A N/A 1.548±0.62 N/A N/A N/A N/A N/A N/A N/A N/A 2.598±1.31
ENSMUST00000110477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110480 N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A
ENSMUST00000157002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000068394 ENSMUST00000089776 0.665±0.02 0.498±0.16 0.447±0.00 1.025±0.00 0.479±0.32 0.912±0.13 0.369±0.15 0.401±0.09 1.000±1.15 0.622±0.26 0.239±0.11 1.321±1.23 1.244±0.98 2.834±3.31
ENSMUSG00000091337 ENSMUST00000164756 25.097±12.88 42.764±5.86 33.689±0.17 131.049±13.89 18.540±9.35 16.453±5.49 9.446±2.42 14.478±4.91 18.168±11.59 30.848±5.93 9.016±0.93 35.812±13.13 19.436±4.90 5.266±0.93

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