C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHC (Src homology 2 domain containing) family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042246 Shc4-001 ENSMUSG00000035109 10090 - 2:125627447-125723387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastTestisENSMUST00000042246
Transcript ID Breast Testis
ENSMUST00000042246 1.548±0.62 2.598±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GC CIL_0008GC_0002 VISTA 2:125191395-125793910
CIL_0004NF CIL_0004NF_0002 CGP 2:125563088-125724148
CIL_0004NA CIL_0004NA_0002 CGP 2:125627447-125724148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006915 IMP apoptotic process
GO:0008284 IMP positive regulation of cell proliferation
GO:0010468 IMP regulation of gene expression
GO:0019904 IPI protein domain specific binding
GO:0030054 IEA cell junction
GO:0030971 IPI receptor tyrosine kinase binding
GO:0035556 IEA intracellular signal transduction
GO:0045211 IEA postsynaptic membrane
GO:0048863 IMP stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332408 SHC4-001 protein_coding Homo_sapiens 0 1916
ENST00000396535 SHC4-003 protein_coding Homo_sapiens 0 1050
ENST00000537958 SHC4-002 protein_coding Homo_sapiens 0 917
ENST00000557797 SHC4-005 nonsense_mediated_decay Homo_sapiens 0 278

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