C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006368-ENSDARG00000073867 CGP 7955 22:21474621-21498043
GeneTranscriptPositionBiotype
ENSDARG00000006368 (crlf1b)
cytokine receptor-like factor 1b 		ENSDART00000007321 (crlf1b-001) 21474621-21486966 protein_coding
ENSDARG00000073867 (C22H19orf60)
chromosome 19 open reading frame 60 		ENSDART00000112839 (C22H19orf60-002) 21490361-21498043 protein_coding
ENSDART00000131743 (C22H19orf60-001) 21488870-21497918 nonsense_mediated_decay

Danio rerio Ensembl (Zv9)

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CIL_0004NN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000006016-ENSG00000006016 CGP 9606 19:18572220-18607741
GeneTranscriptPositionBiotype
ENSG00000006015 (C19orf60)
chromosome 19 open reading frame 60 		ENST00000358607 (C19orf60-001) 18588725-18592336 protein_coding
ENST00000450195 (C19orf60-002) 18588796-18592336 protein_coding
ENST00000595077 (C19orf60-007) 18589872-18592336 retained_intron
ENST00000595490 (C19orf60-005) 18589602-18592336 protein_coding
ENST00000597371 (C19orf60-008) 18588809-18592327 retained_intron
ENST00000598375 (C19orf60-004) 18588685-18592334 retained_intron
ENST00000600997 (C19orf60-003) 18588798-18592336 retained_intron
ENST00000601736 (C19orf60-006) 18588802-18592336 nonsense_mediated_decay
ENSG00000006016 (CRLF1)
cytokine receptor-like factor 1 		ENST00000392386 (CRLF1-001) 18593237-18606850 protein_coding
ENST00000593286 (CRLF1-002) 18599700-18607741 processed_transcript
ENST00000594325 (CRLF1-005) 18572220-18594435 processed_transcript
ENST00000596360 (CRLF1-004) 18593237-18594134 retained_intron
ENST00000597131 (CRLF1-003) 18594362-18598593 protein_coding
ENSG00000105696 (TMEM59L)
transmembrane protein 59-like 		ENST00000262817 (TMEM59L-201) 18612872-18621033 protein_coding
ENST00000594709 (TMEM59L-005) 18615976-18618454 protein_coding
ENST00000594859 (TMEM59L-002) 18612873-18617909 retained_intron
ENST00000598660 (TMEM59L-003) 18612877-18621006 retained_intron
ENST00000600490 (TMEM59L-001) 18607430-18621039 protein_coding
ENSG00000221983 (UBA52)
ubiquitin A-52 residue ribosomal protein fusion product 1 		ENST00000430157 (UBA52-002) 18571802-18575241 protein_coding
ENST00000442744 (UBA52-001) 18571860-18577550 protein_coding
ENST00000594527 (UBA52-013) 18573376-18575241 protein_coding
ENST00000595158 (UBA52-009) 18571882-18575234 protein_coding
ENST00000595683 (UBA52-004) 18571875-18575242 protein_coding
ENST00000596272 (UBA52-012) 18573355-18575241 protein_coding
ENST00000596273 (UBA52-003) 18571855-18575229 protein_coding
ENST00000596304 (UBA52-005) 18571730-18575202 protein_coding
ENST00000597451 (UBA52-011) 18573265-18575241 protein_coding
ENST00000598780 (UBA52-008) 18571927-18575170 protein_coding
ENST00000598814 (UBA52-007) 18571858-18573790 retained_intron
ENST00000599256 (UBA52-006) 18571879-18573748 protein_coding
ENST00000599551 (UBA52-010) 18572740-18575241 protein_coding
ENST00000599595 (UBA52-014) 18573285-18577290 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0004NN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000007888-ENSMUSG00000058833 CGP 10090 8:70493158-70506752
GeneTranscriptPositionBiotype
ENSMUSG00000007888 (Crlf1)
cytokine receptor-like factor 1 		ENSMUST00000008032 (Crlf1-001) 70493158-70504081 protein_coding
ENSMUST00000127983 (Crlf1-005) 70501133-70504030 protein_coding
ENSMUST00000132648 (Crlf1-004) 70493361-70500930 protein_coding
ENSMUSG00000058833 (2810428I15Rik)
RIKEN cDNA 2810428I15 gene 		ENSMUST00000075175 (2810428I15Rik-001) 70504295-70506752 protein_coding
ENSMUST00000128620 (2810428I15Rik-003) 70505851-70506713 retained_intron
ENSMUST00000132107 (2810428I15Rik-004) 70505245-70506699 retained_intron
ENSMUST00000133683 (2810428I15Rik-005) 70504295-70506426 processed_transcript
ENSMUST00000135773 (2810428I15Rik-002) 70504292-70506721 retained_intron
ENSMUST00000136913 (2810428I15Rik-008) 70504299-70506737 protein_coding
ENSMUST00000138196 (2810428I15Rik-006) 70504398-70506108 retained_intron
ENSMUST00000143598 (2810428I15Rik-007) 70504295-70506112 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NN_0001ENSDARG00000006368ENSDART00000007321ENSDARG00000073867ENSDART00000112839ENSDART00000131743CIL_0004NN_0002ENSG00000006015ENST00000358607ENST00000450195ENST00000595077ENST00000595490ENST00000597371ENST00000598375ENST00000600997ENST00000601736ENSG00000006016ENST00000392386ENST00000593286ENST00000594325ENST00000596360ENST00000597131ENSG00000105696ENST00000262817ENST00000594709ENST00000594859ENST00000598660ENST00000600490ENSG00000221983ENST00000430157ENST00000442744ENST00000594527ENST00000595158ENST00000595683ENST00000596272ENST00000596273ENST00000596304ENST00000597451ENST00000598780ENST00000598814ENST00000599256ENST00000599551ENST00000599595CIL_0004NN_0003ENSMUSG00000007888ENSMUST00000008032ENSMUST00000127983ENSMUST00000132648ENSMUSG00000058833ENSMUST00000075175ENSMUST00000128620ENSMUST00000132107ENSMUST00000133683ENSMUST00000135773ENSMUST00000136913ENSMUST00000138196ENSMUST00000143598
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NN_0001ENSDARG00000006368ENSDART00000007321ENSDARG00000073867ENSDART00000112839ENSDART00000131743CIL_0004NN_0002ENSG00000006015ENST00000358607ENST00000450195ENST00000595077ENST00000597371ENST00000600997ENST00000601736ENSG00000006016ENST00000392386ENSG00000105696ENST00000262817ENSG00000221983ENST00000430157ENST00000442744ENST00000596304ENST00000597451ENST00000598814ENST00000599595CIL_0004NN_0003ENSMUSG00000007888ENSMUST00000008032ENSMUST00000127983ENSMUST00000132648ENSMUSG00000058833ENSMUST00000075175ENSMUST00000128620ENSMUST00000132107ENSMUST00000133683ENSMUST00000135773ENSMUST00000136913ENSMUST00000138196
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006368 ENSDART00000007321 N/A N/A N/A 0.174±0.00 N/A N/A 0.802±0.00 0.108±0.00 0.055±0.00 N/A 0.115±0.00 N/A N/A N/A
ENSDARG00000073867 ENSDART00000112839 N/A N/A N/A 4.031±1.21 N/A N/A 9.629±1.69 22.818±10.93 0.957±0.00 N/A 1.535±0.00 N/A N/A N/A
ENSDART00000131743 N/A N/A N/A 1.421±0.22 N/A N/A 1.752±0.00 N/A 0.787±0.00 N/A 1.938±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006015 ENST00000358607 15.242±0.00 18.822±0.00 0.895±0.00 10.251±5.53 9.584±7.85 9.653±8.65 3.860±3.49 11.258±7.00 7.225±6.65 7.640±6.87 7.822±2.37 10.298±6.71 18.256±5.14 5.602±0.00
ENST00000450195 N/A 8.642±0.00 0.636±0.00 5.426±1.43 9.166±0.00 2.925±2.25 7.726±7.01 2.511±0.00 7.458±4.91 8.017±6.77 14.208±1.16 8.581±5.19 12.805±1.33 5.746±2.07
ENST00000595077 N/A N/A 0.310±0.00 N/A N/A N/A 0.115±0.00 0.977±0.00 N/A 0.100±0.00 N/A 1.274±0.62 N/A 0.559±0.00
ENST00000595490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597371 4.107±0.00 8.428±0.00 N/A 3.078±1.33 7.494±0.00 3.319±2.62 3.943±0.00 4.467±0.00 3.937±0.00 7.706±0.00 N/A 13.813±5.64 8.215±0.00 4.112±0.00
ENST00000598375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600997 N/A 3.012±0.00 N/A 0.941±0.00 0.712±0.39 N/A N/A 1.563±0.00 N/A N/A N/A 1.097±0.08 N/A 0.883±0.00
ENST00000601736 N/A N/A N/A N/A N/A 0.465±0.00 0.430±0.00 N/A N/A N/A 8.009±0.00 N/A N/A 2.268±0.00
ENSG00000006016 ENST00000392386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 49.789±21.37 N/A
ENST00000593286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105696 ENST00000262817 N/A N/A N/A 90.692±62.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221983 ENST00000430157 354.855±0.00 388.909±0.00 9.674±0.00 91.629±34.04 162.105±108.21 131.857±92.75 19.121±0.00 90.280±26.05 64.525±23.31 40.643±0.00 18.096±0.00 311.426±396.15 116.646±28.32 193.386±139.06
ENST00000442744 N/A N/A N/A 15.326±4.19 N/A 3.105±0.00 0.824±0.00 8.132±0.00 4.542±0.00 1.773±0.00 2.536±0.00 10.406±7.85 6.984±0.00 7.672±0.00
ENST00000594527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596304 N/A N/A N/A N/A N/A 178.388±0.00 N/A N/A N/A N/A N/A 350.794±0.00 N/A 231.540±0.00
ENST00000597451 647.133±0.00 755.929±0.00 6.486±0.00 109.271±0.00 512.308±0.00 539.626±0.00 198.934±191.64 131.356±112.82 207.966±179.69 1239.420±0.00 677.522±605.99 330.199±413.23 814.465±162.19 167.526±136.80
ENST00000598780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598814 N/A N/A 3.753±0.00 N/A 13.593±0.00 18.475±0.00 7.540±0.00 24.299±0.00 N/A 16.309±0.00 43.904±0.00 19.274±3.27 39.874±0.00 N/A
ENST00000599256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.843±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000007888 ENSMUST00000008032 0.301±0.16 0.098±0.03 0.128±0.05 0.351±0.08 0.430±0.12 0.623±0.35 0.228±0.09 0.473±0.13 0.144±0.21 8.044±2.35 1.274±0.48 2.257±1.17 1.164±0.58 4.783±2.76
ENSMUST00000127983 1.438±0.60 0.499±0.19 N/A 1.030±0.00 1.837±0.44 1.843±0.57 0.350±0.03 0.554±0.10 0.464±0.28 N/A N/A 2.187±0.82 1.598±1.00 51.733±20.95
ENSMUST00000132648 N/A N/A N/A N/A 0.607±0.00 N/A N/A N/A N/A N/A N/A 1.152±0.00 3.844±0.00 N/A
ENSMUSG00000058833 ENSMUST00000075175 72.083±15.83 66.295±12.93 61.727±7.06 56.740±30.70 74.855±27.79 53.558±15.12 63.917±10.92 71.037±13.31 57.306±14.01 66.330±11.68 59.785±6.34 44.483±19.11 29.187±13.68 9.024±0.94
ENSMUST00000128620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.993±0.00
ENSMUST00000132107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.572±0.90 2.136±0.00 N/A
ENSMUST00000133683 45.047±14.31 N/A N/A N/A 39.246±4.25 N/A N/A 11.042±0.00 N/A N/A N/A 20.312±7.99 11.699±3.43 3.321±0.96
ENSMUST00000135773 N/A N/A N/A 12.632±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.854±0.00
ENSMUST00000136913 29.927±0.00 86.767±5.56 N/A N/A 54.473±12.23 31.389±9.85 N/A 24.452±6.27 N/A 27.156±0.00 N/A 73.075±20.56 N/A 2.279±0.42
ENSMUST00000138196 N/A N/A N/A 9.337±0.00 30.031±9.56 N/A N/A N/A N/A N/A N/A 15.738±2.66 10.384±3.49 14.058±0.00
ENSMUST00000143598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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