C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039411-ENSDARG00000000551 CGP 7955 13:24639272-24671375
GeneTranscriptPositionBiotype
ENSDARG00000000551 (slc1a4)
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 		ENSDART00000043004 (slc1a4-001) 24655879-24671222 protein_coding
ENSDART00000057584 (slc1a4-201) 24655104-24671222 protein_coding
ENSDART00000127741 (slc1a4-202) 24655110-24671375 protein_coding
ENSDARG00000039411 (cep68)
centrosomal protein 68 		ENSDART00000057588 (cep68-001) 24645405-24652985 protein_coding
ENSDART00000125949 (cep68-201) 24639272-24649722 protein_coding
ENSDART00000147514 (cep68-002) 24648971-24652956 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004OM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044066-ENSMUSG00000020142 CGP 10090 11:20227037-20332713
GeneTranscriptPositionBiotype
ENSMUSG00000020142 (Slc1a4)
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 		ENSMUST00000004634 (Slc1a4-001) 20302205-20332684 protein_coding
ENSMUST00000109594 (Slc1a4-201) 20302180-20332713 protein_coding
ENSMUSG00000044066 (Cep68)
centrosomal protein 68 		ENSMUST00000050611 (Cep68-001) 20227037-20249418 protein_coding
ENSMUST00000109596 (Cep68-002) 20238386-20249418 protein_coding
ENSMUST00000161218 (Cep68-004) 20241523-20249383 retained_intron
ENSMUST00000162811 (Cep68-003) 20238387-20249429 protein_coding
ENSMUSG00000083792 (Rpl12-ps2)
ribosomal proteimn L12-ps2 		ENSMUST00000121298 (Rpl12-ps2-001) 20290063-20290383 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OM_0001ENSDARG00000000551ENSDART00000043004ENSDART00000057584ENSDART00000127741ENSDARG00000039411ENSDART00000057588ENSDART00000125949ENSDART00000147514CIL_0004OM_0002ENSMUSG00000020142ENSMUST00000004634ENSMUST00000109594ENSMUSG00000044066ENSMUST00000050611ENSMUST00000109596ENSMUST00000161218ENSMUST00000162811ENSMUSG00000083792ENSMUST00000121298
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OM_0001ENSDARG00000000551ENSDART00000043004ENSDART00000057584ENSDART00000127741ENSDARG00000039411ENSDART00000057588ENSDART00000125949CIL_0004OM_0002ENSMUSG00000020142ENSMUST00000004634ENSMUST00000109594ENSMUSG00000044066ENSMUST00000050611ENSMUST00000109596ENSMUST00000161218ENSMUST00000162811ENSMUSG00000083792ENSMUST00000121298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000551 ENSDART00000043004 N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A
ENSDART00000057584 N/A N/A N/A 27.539±5.86 N/A N/A 1.020±0.51 0.558±0.00 N/A N/A 2.427±0.00 N/A N/A N/A
ENSDART00000127741 N/A N/A N/A 9.066±0.35 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000039411 ENSDART00000057588 N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENSDART00000125949 N/A N/A N/A 0.723±0.00 N/A N/A 1.002±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020142 ENSMUST00000004634 1.353±0.60 2.717±0.37 0.802±0.00 8.982±0.00 0.851±0.38 5.035±1.64 0.591±0.13 1.779±0.34 1.814±0.55 4.353±0.77 0.189±0.06 2.356±1.15 10.933±16.71 0.310±0.07
ENSMUST00000109594 1.529±0.49 0.779±0.10 1.261±0.18 7.331±3.86 0.878±0.11 2.502±1.45 0.395±0.01 2.330±1.04 3.813±2.80 2.517±1.29 N/A 1.815±0.49 1.252±0.38 N/A
ENSMUSG00000044066 ENSMUST00000050611 4.385±1.33 2.550±1.37 5.463±0.24 5.387±2.28 3.983±0.64 1.712±0.20 5.480±0.97 3.210±0.32 2.185±0.95 5.359±0.61 5.789±0.75 5.062±1.67 2.884±1.19 1.359±0.43
ENSMUST00000109596 4.124±0.15 5.895±1.03 N/A N/A 4.689±1.59 3.011±1.44 3.180±0.47 3.281±0.81 1.940±0.56 4.267±0.72 2.365±0.00 9.653±1.48 2.803±0.35 1.355±0.19
ENSMUST00000161218 N/A N/A N/A 4.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162811 1.325±0.00 1.288±0.30 N/A 1.600±0.25 1.276±0.13 0.622±0.01 N/A N/A 0.862±0.15 1.468±0.18 N/A 1.924±0.04 0.866±0.12 0.611±0.08
ENSMUSG00000083792 ENSMUST00000121298 N/A N/A N/A 0.272±0.22 N/A N/A N/A N/A N/A N/A 0.215±0.00 N/A 0.033±0.00 N/A

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