C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004634 Slc1a4-001 ENSMUSG00000020142 10090 - 11:20302205-20332684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004634 1.353±0.60 2.717±0.37 0.802±0.00 8.982±0.00 0.851±0.38 5.035±1.64 0.591±0.13 1.779±0.34 1.814±0.55 4.353±0.77 0.189±0.06 2.356±1.15 10.933±16.71 0.310±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OM CIL_0004OM_0002 CGP 11:20227037-20332713
CIL_0004OP CIL_0004OP_0002 CGP 11:20302180-20653021

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005882 IDA intermediate filament
GO:0006835 IEA dicarboxylic acid transport
GO:0015175 IDA neutral amino acid transmembrane transporter activity
GO:0016020 IEA membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000234256 SLC1A4-001 protein_coding Homo_sapiens 0 1773
ENST00000480594 SLC1A4-002 retained_intron Homo_sapiens 0 1245
ENST00000531327 SLC1A4-005 protein_coding Homo_sapiens 0 732

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