C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109594 Slc1a4-201 ENSMUSG00000020142 10090 - 11:20302180-20332713 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000109594
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000109594 1.529±0.49 0.779±0.10 1.261±0.18 7.331±3.86 0.878±0.11 2.502±1.45 0.395±0.01 2.330±1.04 3.813±2.80 2.517±1.29 1.815±0.49 1.252±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OM CIL_0004OM_0002 CGP 11:20227037-20332713
CIL_0004OP CIL_0004OP_0002 CGP 11:20302180-20653021

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005254 IEA chloride channel activity
GO:0005813 IEA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005882 IDA intermediate filament
GO:0006821 IEA chloride transport
GO:0006835 IEA dicarboxylic acid transport
GO:0009986 IEA cell surface
GO:0015175 IDA neutral amino acid transmembrane transporter activity
GO:0015180 IEA L-alanine transmembrane transporter activity
GO:0015184 IEA L-cystine transmembrane transporter activity
GO:0015193 IEA L-proline transmembrane transporter activity
GO:0015194 IEA L-serine transmembrane transporter activity
GO:0015195 IEA L-threonine transmembrane transporter activity
GO:0015808 IEA L-alanine transport
GO:0015811 IEA L-cystine transport
GO:0015824 IEA proline transport
GO:0015825 IEA L-serine transport
GO:0015826 IEA threonine transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0030425 IEA dendrite
GO:0034589 IEA hydroxyproline transport
GO:0034590 IEA L-hydroxyproline transmembrane transporter activity
GO:0035524 IEA proline transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0050890 IEA cognition
GO:0070062 IEA extracellular vesicular exosome
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000234256 SLC1A4-001 protein_coding Homo_sapiens 0 1773
ENST00000480594 SLC1A4-002 retained_intron Homo_sapiens 0 1245
ENST00000531327 SLC1A4-005 protein_coding Homo_sapiens 0 732

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