C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KH domain containing, RNA binding, signal transduction associated 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022954 Khdrbs3-201 ENSMUSG00000022332 10090 + 15:68928420-69093512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022954 5.410±2.29 10.323±4.40 16.583±0.50 52.574±6.33 2.911±0.92 7.342±3.08 12.300±4.51 7.410±2.31 4.697±2.08 5.112±2.52 5.313±1.27 18.297±5.34 1.980±0.42 18.510±6.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PU CIL_0004PU_0002 CGP 15:68083766-69093512
CIL_0004PR CIL_0004PR_0002 CGP 15:68928420-71727838

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0017124 IEA SH3 domain binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355849 KHDRBS3-001 protein_coding Homo_sapiens 0 2058
ENST00000517394 KHDRBS3-004 protein_coding Homo_sapiens 0 614
ENST00000517859 KHDRBS3-007 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000518728 KHDRBS3-008 processed_transcript Homo_sapiens 4e-35 150
ENST00000519600 KHDRBS3-003 retained_intron Homo_sapiens 0 335
ENST00000520981 KHDRBS3-002 protein_coding Homo_sapiens 0 948
ENST00000521461 KHDRBS3-009 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000522433 KHDRBS3-010 processed_transcript Homo_sapiens 0 455
ENST00000524199 KHDRBS3-005 protein_coding Homo_sapiens 0 977
ENST00000524282 KHDRBS3-006 protein_coding Homo_sapiens 0 684

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