C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167545 Sema6b-202 ENSMUSG00000001227 10090 - 17:56123085-56133852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000167545
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000167545 3.205±1.10 4.168±1.50 0.883±0.04 3.386±0.64 1.537±0.66 1.751±0.37 0.940±0.31 0.819±0.66 3.321±0.41 0.708±0.37 1.498±0.61 1.527±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W7 CIL_0004W7_0002 CGP 17:56119680-56140343
CIL_0000A4 CIL_0000A4_0002 CGP 17:56123085-56173955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000586582 SEMA6B-001 protein_coding Homo_sapiens 0 2381

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