C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001256 Sema6b-201 ENSMUSG00000001227 10090 - 17:56123085-56140343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001256 3.465±2.10 4.928±2.50 0.812±0.08 21.152±8.85 2.562±1.19 0.520±0.10 1.311±0.00 0.592±0.24 0.507±0.15 1.370±0.48 0.713±0.46 2.955±1.09 0.581±0.16 0.185±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W7 CIL_0004W7_0002 CGP 17:56119680-56140343
CIL_0000A4 CIL_0000A4_0002 CGP 17:56123085-56173955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000586582 SEMA6B-001 protein_coding Homo_sapiens 0 2370

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