C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004WB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000013997-ENSDARG00000078186 CGP 7955 3:56286616-56396517
GeneTranscriptPositionBiotype
ENSDARG00000013997 (ern1)
endoplasmic reticulum to nucleus signaling 1 		ENSDART00000014182 (ern1-201) 56286616-56343600 protein_coding
ENSDART00000153774 (ern1-001) 56289702-56343714 protein_coding
ENSDART00000154685 (ern1-002) 56321420-56346224 processed_transcript
ENSDARG00000078186 (tex2)
testis expressed 2 		ENSDART00000108995 (tex2-001) 56352328-56376636 protein_coding
ENSDART00000123544 (tex2-201) 56348770-56374422 protein_coding
ENSDART00000155376 (tex2-002) 56374091-56396517 protein_coding
ENSDARG00000080685 (SNORA50)
Small nucleolar RNA SNORA50 		ENSDART00000117075 (SNORA50.1-201) 56348580-56348714 snoRNA
ENSDARG00000097737 (si:dkey-188h10.3)
si:dkey-188h10.3 		ENSDART00000154650 (si:dkey-188h10.3-001) 56347227-56348548 lincRNA
CIL_0004WB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178607-ENSG00000136478 CGP 9606 17:64039142-64263301
GeneTranscriptPositionBiotype
ENSG00000136478 (TEX2)
testis expressed 2 		ENST00000258991 (TEX2-002) 64147227-64263227 protein_coding
ENST00000577489 (TEX2-008) 64154947-64188454 retained_intron
ENST00000581812 (TEX2-009) 64150844-64155220 processed_transcript
ENST00000583097 (TEX2-003) 64147674-64230756 protein_coding
ENST00000583501 (TEX2-004) 64148883-64212719 protein_coding
ENST00000583738 (TEX2-007) 64214090-64263247 protein_coding
ENST00000583922 (TEX2-006) 64214061-64256091 protein_coding
ENST00000584379 (TEX2-001) 64147687-64263301 protein_coding
ENST00000584498 (TEX2-005) 64147441-64156234 retained_intron
ENST00000615733 (TEX2-201) 64147674-64230756 protein_coding
ENSG00000178607 (ERN1)
endoplasmic reticulum to nucleus signaling 1 		ENST00000433197 (ERN1-001) 64039142-64130125 protein_coding
ENST00000577567 (ERN1-005) 64068237-64080474 processed_transcript
ENST00000579249 (ERN1-006) 64067860-64072096 retained_intron
ENST00000583028 (ERN1-002) 64097888-64130144 retained_intron
ENST00000583077 (ERN1-007) 64053967-64054767 retained_intron
ENST00000583896 (ERN1-004) 64060576-64066984 retained_intron
ENST00000584041 (ERN1-003) 64075077-64130142 retained_intron
ENST00000606895 (ERN1-008) 64128752-64130819 protein_coding
ENSG00000199753 (SNORD104)
small nucleolar RNA, C/D box 104 		ENST00000362883 (SNORD104-201) 64146083-64146152 snoRNA
ENSG00000266402 (SNORA76C)
small nucleolar RNA, H/ACA box 76C 		ENST00000580828 (SNORA76C-002) 64145970-64146309 lincRNA
ENST00000582965 (SNORA76C-001) 64145970-64146476 lincRNA
ENSG00000277887 (SNORA76C)
small nucleolar RNA, H/ACA box 76C 		ENST00000408535 (SNORA76C-201) 64146339-64146471 snoRNA
CIL_0004WB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020715-ENSMUSG00000040548 CGP 10090 11:106394650-106613423
GeneTranscriptPositionBiotype
ENSMUSG00000020715 (Ern1)
endoplasmic reticulum (ER) to nucleus signalling 1 		ENSMUST00000001059 (Ern1-001) 106394650-106487796 protein_coding
ENSMUST00000106799 (Ern1-004) 106458556-106487803 protein_coding
ENSMUST00000106800 (Ern1-005) 106434681-106487808 protein_coding
ENSMUST00000106801 (Ern1-002) 106413766-106487836 protein_coding
ENSMUST00000131895 (Ern1-003) 106397451-106487852 processed_transcript
ENSMUSG00000040548 (Tex2)
testis expressed gene 2 		ENSMUST00000042780 (Tex2-001) 106502147-106612930 protein_coding
ENSMUST00000103070 (Tex2-002) 106544058-106579113 protein_coding
ENSMUST00000128933 (Tex2-003) 106568098-106613423 protein_coding
ENSMUST00000153870 (Tex2-004) 106568483-106580600 protein_coding
ENSMUSG00000065126 (Snord104)
small nucleolar RNA, C/D box 104 		ENSMUST00000083192 (Snord104-201) 106500993-106501062 snoRNA
ENSMUSG00000080540 (Gm22711)
predicted gene, 22711 		ENSMUST00000116890 (Gm22711-201) 106501245-106501377 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WB_0001ENSDARG00000013997ENSDART00000014182ENSDART00000153774ENSDART00000154685ENSDARG00000078186ENSDART00000108995ENSDART00000123544ENSDART00000155376ENSDARG00000080685ENSDART00000117075ENSDARG00000097737ENSDART00000154650CIL_0004WB_0002ENSG00000136478ENST00000258991ENST00000577489ENST00000581812ENST00000583097ENST00000583501ENST00000583738ENST00000583922ENST00000584379ENST00000584498ENST00000615733ENSG00000178607ENST00000433197ENST00000577567ENST00000579249ENST00000583028ENST00000583077ENST00000583896ENST00000584041ENST00000606895ENSG00000199753ENST00000362883ENSG00000266402ENST00000580828ENST00000582965ENSG00000277887ENST00000408535CIL_0004WB_0003ENSMUSG00000020715ENSMUST00000001059ENSMUST00000106799ENSMUST00000106800ENSMUST00000106801ENSMUST00000131895ENSMUSG00000040548ENSMUST00000042780ENSMUST00000103070ENSMUST00000128933ENSMUST00000153870ENSMUSG00000065126ENSMUST00000083192ENSMUSG00000080540ENSMUST00000116890
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WB_0001ENSDARG00000013997ENSDART00000014182ENSDART00000153774ENSDARG00000078186ENSDART00000108995ENSDART00000123544ENSDARG00000080685ENSDART00000117075ENSDARG00000097737ENSDART00000154650CIL_0004WB_0002ENSG00000136478ENST00000258991ENST00000581812ENST00000583097ENST00000583501ENST00000584379ENSG00000178607ENST00000433197ENST00000606895ENSG00000199753ENST00000362883ENSG00000266402ENST00000580828ENST00000582965ENSG00000277887ENST00000408535CIL_0004WB_0003ENSMUSG00000020715ENSMUST00000001059ENSMUST00000106799ENSMUST00000106801ENSMUST00000131895ENSMUSG00000040548ENSMUST00000042780ENSMUST00000103070ENSMUST00000128933ENSMUSG00000065126ENSMUST00000083192ENSMUSG00000080540ENSMUST00000116890
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013997 ENSDART00000014182 N/A N/A N/A 2.107±1.86 N/A N/A 0.733±0.56 1.161±0.35 1.798±0.00 N/A 0.906±0.00 N/A N/A N/A
ENSDART00000153774 N/A N/A N/A N/A N/A N/A 1.075±0.00 2.054±0.00 0.892±0.00 N/A N/A N/A N/A N/A
ENSDART00000154685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000078186 ENSDART00000108995 N/A N/A N/A N/A N/A N/A N/A 6.830±0.00 7.164±0.00 N/A N/A N/A N/A N/A
ENSDART00000123544 N/A N/A N/A 1.350±0.25 N/A N/A 3.779±1.52 5.015±2.29 1.018±0.00 N/A 0.998±0.00 N/A N/A N/A
ENSDART00000155376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000080685 ENSDART00000117075 N/A N/A N/A 46.144±0.00 N/A N/A 0.831±0.00 N/A 3.394±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097737 ENSDART00000154650 N/A N/A N/A 0.716±0.18 N/A N/A 1.008±0.84 1.467±0.39 0.892±0.00 N/A 0.554±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136478 ENST00000258991 N/A 1.389±0.00 0.686±0.00 N/A N/A 3.482±0.00 0.961±0.00 N/A N/A 1.685±0.00 N/A 2.478±1.72 1.322±0.00 5.741±0.00
ENST00000577489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.918±0.00 N/A N/A
ENST00000583097 N/A N/A 1.945±0.00 2.168±0.00 1.260±0.00 1.775±0.00 N/A N/A N/A N/A N/A 3.854±0.00 0.622±0.00 4.991±0.00
ENST00000583501 N/A N/A N/A 2.370±0.00 N/A N/A N/A N/A N/A 1.702±0.00 N/A 1.741±0.00 2.682±0.00 11.626±0.00
ENST00000583738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584379 8.814±0.00 4.270±0.00 N/A 21.097±0.00 6.954±4.91 6.246±0.00 5.634±2.98 6.073±3.30 4.986±3.02 5.681±4.20 7.852±2.09 6.589±4.25 3.486±0.37 24.217±5.01
ENST00000584498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178607 ENST00000433197 1.213±0.00 1.333±0.00 N/A 0.288±0.00 N/A 0.626±0.16 0.446±0.31 0.750±0.00 0.861±0.53 1.568±0.49 0.759±0.09 2.044±1.70 0.850±0.14 0.757±0.00
ENST00000577567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606895 1.622±0.00 N/A N/A 0.836±0.00 2.914±0.00 N/A 0.390±0.00 N/A N/A 7.785±4.57 0.575±0.00 3.413±0.48 1.790±0.46 1.549±0.45
ENSG00000199753 ENST00000362883 N/A 3.909±0.00 N/A 0.426±0.00 0.424±0.00 1.200±0.00 N/A 7.321±0.00 11.429±0.00 9.104±0.00 1.152±0.00 124.568±0.00 N/A N/A
ENSG00000266402 ENST00000580828 0.324±0.00 15.559±0.00 N/A 1.581±0.00 2.268±0.00 2.010±0.00 N/A 6.615±0.00 89.648±82.53 6.645±0.00 4.903±0.00 328.812±323.56 N/A 2.586±0.00
ENST00000582965 N/A N/A N/A 2.370±0.00 0.954±0.00 2.246±0.00 0.241±0.00 7.620±0.00 2.167±0.00 N/A N/A 1.899±0.00 0.391±0.03 N/A
ENSG00000277887 ENST00000408535 N/A N/A N/A N/A 16.240±0.00 0.645±0.00 N/A N/A N/A N/A 80.492±77.42 N/A 1.950±0.00 0.312±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020715 ENSMUST00000001059 4.716±1.65 36.748±3.79 3.834±1.07 2.521±1.03 5.987±2.57 3.920±1.86 2.343±0.29 3.708±1.13 8.020±4.84 5.582±3.34 1.676±0.21 14.487±5.98 9.142±4.06 2.473±1.20
ENSMUST00000106799 N/A 481.874±45.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A 81.016±14.71 N/A N/A
ENSMUST00000106800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106801 N/A N/A N/A N/A 6.674±1.09 7.586±1.89 N/A 3.448±0.00 N/A 7.859±0.94 N/A N/A N/A N/A
ENSMUST00000131895 N/A 18.866±5.80 N/A N/A N/A 3.374±0.00 N/A 1.240±0.00 N/A N/A N/A 11.412±2.33 N/A 0.752±0.07
ENSMUSG00000040548 ENSMUST00000042780 8.555±0.68 6.690±0.94 3.567±1.13 6.552±4.43 8.557±2.33 7.515±1.31 5.346±0.60 12.871±2.47 13.976±10.91 5.590±2.47 12.220±3.40 11.675±3.88 25.870±6.83 56.836±21.38
ENSMUST00000103070 5.154±2.00 3.280±0.97 N/A N/A 3.407±1.39 N/A 2.692±0.00 N/A N/A 1.969±0.00 N/A 4.467±1.25 N/A 33.846±7.80
ENSMUST00000128933 N/A 9.115±1.52 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065126 ENSMUST00000083192 N/A N/A N/A N/A 164001.000±0.00 N/A N/A N/A N/A N/A N/A 200199.000±0.00 N/A N/A
ENSMUSG00000080540 ENSMUST00000116890 N/A N/A N/A 12.394±0.00 N/A 1538.070±0.00 N/A N/A N/A N/A N/A 1808.270±0.00 N/A N/A

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