C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carcinoembryonic antigen-related cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098666 Ceacam1-201 ENSMUSG00000074272 10090 - 7:25461702-25477625 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098666 1.271±0.09 0.676±0.25 0.601±0.19 0.051±0.00 1.736±0.60 443.788±51.58 0.696±0.14 5.018±1.33 13.969±10.95 4.502±0.67 0.262±0.09 0.846±0.48 1.579±1.05 0.059±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TR CIL_0008TR_0002 VISTA 7:25324415-25925712
CIL_00053L CIL_00053L_0002 CGP 7:25400053-25477625
CIL_0003UJ CIL_0003UJ_0015 CGP 7:25461702-25540004

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0005886 IDA plasma membrane
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0009615 IEA response to virus
GO:0009897 IDA external side of plasma membrane
GO:0016021 ISO integral component of membrane
GO:0016032 IEA viral process
GO:0043406 ISO positive regulation of MAP kinase activity
GO:0060170 IDA ciliary membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000161559 CEACAM1-001 protein_coding Homo_sapiens 0 431
ENST00000199764 CEACAM6-001 protein_coding Homo_sapiens 0 272
ENST00000221992 CEACAM5-001 protein_coding Homo_sapiens 0 263
ENST00000344391 CEACAM1-005 retained_intron Homo_sapiens 0 337
ENST00000352591 CEACAM1-011 protein_coding Homo_sapiens 0 337
ENST00000358394 CEACAM1-012 protein_coding Homo_sapiens 0 337
ENST00000377806 CEACAM1-003 retained_intron Homo_sapiens 0 399
ENST00000398599 CEACAM5-002 protein_coding Homo_sapiens 0 268
ENST00000403136 CEACAM1-004 retained_intron Homo_sapiens 0 337
ENST00000403444 CEACAM1-002 protein_coding Homo_sapiens 0 484
ENST00000403461 CEACAM1-006 protein_coding Homo_sapiens 0 337
ENST00000405816 CEACAM5-003 protein_coding Homo_sapiens 0 263
ENST00000413902 CEACAMP8-001 unprocessed_pseudogene Homo_sapiens 8e-17 92
ENST00000442990 CEACAMP9-001 unprocessed_pseudogene Homo_sapiens 5e-18 95
ENST00000444105 CEACAMP7-001 unprocessed_pseudogene Homo_sapiens 0.00000000009 71
ENST00000452007 CEACAMP6-001 unprocessed_pseudogene Homo_sapiens 2e-22 110
ENST00000596606 CEACAM5-005 retained_intron Homo_sapiens 5e-37 159
ENST00000599389 CEACAM1-013 protein_coding Homo_sapiens 0 337
ENST00000615021 CEACAM5-201 protein_coding Homo_sapiens 0 268
ENST00000617332 CEACAM5-203 protein_coding Homo_sapiens 0 263

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