C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000541_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069159-ENSDARG00000069157 CGP 7955 10:25900835-25962770
GeneTranscriptPositionBiotype
ENSDARG00000069157 (tmem135)
transmembrane protein 135 		ENSDART00000123820 (tmem135-001) 25947479-25962770 protein_coding
ENSDARG00000069159 (rab38b)
RAB38b, member of RAS oncogene family 		ENSDART00000100438 (rab38b-201) 25900835-25912102 protein_coding
ENSDART00000140186 (rab38b-001) 25905487-25912318 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000541_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030559-ENSMUSG00000039428 CGP 10090 7:88430273-89404222
GeneTranscriptPositionBiotype
ENSMUSG00000030559 (Rab38)
RAB38, member RAS oncogene family 		ENSMUST00000107256 (Rab38-001) 88430273-88491466 protein_coding
ENSMUSG00000039428 (Tmem135)
transmembrane protein 135 		ENSMUST00000041968 (Tmem135-001) 89139723-89338787 protein_coding
ENSMUST00000117852 (Tmem135-002) 89146073-89338760 protein_coding
ENSMUST00000124477 (Tmem135-008) 89156448-89404222 processed_transcript
ENSMUST00000136267 (Tmem135-006) 89154127-89159617 processed_transcript
ENSMUST00000137723 (Tmem135-003) 89305467-89338737 protein_coding
ENSMUST00000139320 (Tmem135-005) 89158978-89298290 processed_transcript
ENSMUST00000154434 (Tmem135-004) 89304487-89338691 retained_intron
ENSMUST00000156153 (Tmem135-007) 89141856-89154300 retained_intron
ENSMUSG00000069972 (Rps13-ps2)
ribosomal protein S13, pseudogene 2 		ENSMUST00000182017 (Rps13-ps2-001) 88530446-88530898 processed_pseudogene
ENSMUSG00000080748 (Gm15661)
predicted gene 15661 		ENSMUST00000117390 (Gm15661-001) 88448675-88449230 processed_pseudogene
ENSMUSG00000101924 (RP24-72H18.1)
predicted gene 28748 		ENSMUST00000187465 (RP24-72H18.1-001) 89337179-89368419 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000541_0001ENSDARG00000069157ENSDART00000123820ENSDARG00000069159ENSDART00000100438ENSDART00000140186CIL_000541_0002ENSMUSG00000030559ENSMUST00000107256ENSMUSG00000039428ENSMUST00000041968ENSMUST00000117852ENSMUST00000124477ENSMUST00000136267ENSMUST00000137723ENSMUST00000139320ENSMUST00000154434ENSMUST00000156153ENSMUSG00000069972ENSMUST00000182017ENSMUSG00000080748ENSMUST00000117390ENSMUSG00000101924ENSMUST00000187465
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000541_0001ENSDARG00000069157ENSDART00000123820ENSDARG00000069159ENSDART00000100438ENSDART00000140186CIL_000541_0002ENSMUSG00000030559ENSMUST00000107256ENSMUSG00000039428ENSMUST00000041968ENSMUST00000124477ENSMUST00000136267ENSMUST00000137723ENSMUSG00000069972ENSMUST00000182017ENSMUSG00000080748ENSMUST00000117390ENSMUSG00000101924ENSMUST00000187465
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069157 ENSDART00000123820 N/A N/A N/A 6.151±4.01 N/A N/A 3.710±0.59 5.730±0.00 0.671±0.00 N/A 1.583±0.00 N/A N/A N/A
ENSDARG00000069159 ENSDART00000100438 N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENSDART00000140186 N/A N/A N/A 0.145±0.00 N/A N/A 0.922±0.00 0.622±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030559 ENSMUST00000107256 1.398±0.70 0.714±0.24 1.701±0.25 0.519±0.16 2.820±0.85 2.114±0.27 0.129±0.09 5.189±0.74 1.079±0.94 5.000±0.31 0.076±0.04 2.474±0.97 0.114±0.10 0.055±0.00
ENSMUSG00000039428 ENSMUST00000041968 24.938±14.94 52.438±3.17 2.733±0.17 5.544±2.09 20.465±5.93 10.623±1.67 5.393±2.47 16.732±5.88 8.144±4.72 10.154±1.69 1.364±0.20 19.937±5.35 3.352±0.93 2.215±0.27
ENSMUST00000117852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124477 N/A N/A N/A N/A N/A N/A N/A 16.409±1.42 N/A N/A N/A N/A N/A 2.167±0.05
ENSMUST00000136267 N/A N/A N/A 31.247±0.00 N/A N/A N/A N/A N/A N/A N/A 35.393±0.00 18.597±0.00 2.512±0.00
ENSMUST00000137723 60.304±46.35 100.362±21.12 N/A N/A 75.870±12.14 12.120±2.25 8.702±0.23 28.433±8.39 27.653±2.40 15.326±2.50 N/A 28.153±5.50 N/A N/A
ENSMUST00000139320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000069972 ENSMUST00000182017 0.261±0.05 N/A 3.236±2.57 3.474±0.04 0.244±0.03 0.210±0.08 0.120±0.00 0.121±0.04 6.463±4.57 0.116±0.01 1.274±0.38 0.380±0.00 0.673±0.55 0.105±0.01
ENSMUSG00000080748 ENSMUST00000117390 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000101924 ENSMUST00000187465 0.078±0.00 N/A 0.027±0.02 0.013±0.00 0.093±0.04 0.094±0.00 N/A 0.040±0.00 0.028±0.03 0.055±0.00 0.042±0.00 0.062±0.00 0.016±0.00 N/A

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