C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S13, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182017 Rps13-ps2-001 ENSMUSG00000069972 10090 - 7:88530446-88530898 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182017
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182017 0.261±0.05 3.236±2.57 3.474±0.04 0.244±0.03 0.210±0.08 0.120±0.00 0.121±0.04 6.463±4.57 0.116±0.01 1.274±0.38 0.380±0.00 0.673±0.55 0.105±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000541 CIL_000541_0002 CGP 7:88430273-89404222

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228140 RPS13-010 protein_coding Homo_sapiens 0 355
ENST00000437890 RPS13P2-001 processed_pseudogene Homo_sapiens 0 459
ENST00000448956 RP6-29D12.3-001 processed_pseudogene Homo_sapiens 6e-28 126
ENST00000458382 RP11-272G22.2-001 processed_pseudogene Homo_sapiens 1e-26 122
ENST00000525634 RPS13-001 protein_coding Homo_sapiens 0 510
ENST00000525828 RPS13-005 retained_intron Homo_sapiens 0 477
ENST00000526895 RPS13-002 processed_transcript Homo_sapiens 0 484
ENST00000528074 RPS13-004 retained_intron Homo_sapiens 2e-17 94
ENST00000531908 RPS13-008 retained_intron Homo_sapiens 0 329
ENST00000533969 RPS13-007 protein_coding Homo_sapiens 0 187
ENST00000534329 RPS13-003 retained_intron Homo_sapiens 0 191

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