C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB38, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107256 Rab38-001 ENSMUSG00000030559 10090 + 7:88430273-88491466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107256 1.398±0.70 0.714±0.24 1.701±0.25 0.519±0.16 2.820±0.85 2.114±0.27 0.129±0.09 5.189±0.74 1.079±0.94 5.000±0.31 0.076±0.04 2.474±0.97 0.114±0.10 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000541 CIL_000541_0002 CGP 7:88430273-89404222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005769 IEA early endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006996 IEA organelle organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0030742 IEA GTP-dependent protein binding
GO:0031982 IEA vesicle
GO:0032403 IEA protein complex binding
GO:0032438 IEA melanosome organization
GO:0035646 IEA endosome to melanosome transport
GO:0035650 IEA AP-1 adaptor complex binding
GO:0035651 IEA AP-3 adaptor complex binding
GO:0042470 IEA melanosome
GO:0045335 ISS phagocytic vesicle
GO:0060155 IEA platelet dense granule organization
GO:0072657 IEA protein localization to membrane
GO:0090383 ISS phagosome acidification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243662 RAB38-001 protein_coding Homo_sapiens 0 970
ENST00000526372 RAB38-002 protein_coding Homo_sapiens 0 708
ENST00000531138 RAB38-003 protein_coding Homo_sapiens 0 318

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