C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000567_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000012450-ENSDARG00000058219 CGP 7955 15:16362334-16425071
GeneTranscriptPositionBiotype
ENSDARG00000012450 (vmp1)
vacuole membrane protein 1 		ENSDART00000018461 (vmp1-001) 16362334-16392367 protein_coding
ENSDART00000111753 (vmp1-201) 16362369-16392366 protein_coding
ENSDART00000129155 (vmp1-002) 16389311-16391943 retained_intron
ENSDARG00000058219 (tubd1)
tubulin, delta 1 		ENSDART00000146735 (tubd1-001) 16416336-16425071 protein_coding
ENSDARG00000096955 (si:ch211-217n8.3)
si:ch211-217n8.3 		ENSDART00000135635 (si:ch211-217n8.3-006) 16398527-16400366 lincRNA
ENSDART00000145547 (si:ch211-217n8.3-007) 16398565-16401509 lincRNA
ENSDART00000148467 (si:ch211-217n8.3-001) 16398803-16401581 lincRNA
ENSDART00000149845 (si:ch211-217n8.3-002) 16398849-16401502 retained_intron
ENSDART00000153990 (si:ch211-217n8.3-005) 16398680-16401597 retained_intron
ENSDART00000155019 (si:ch211-217n8.3-004) 16398847-16400368 retained_intron
ENSDART00000155522 (si:ch211-217n8.3-003) 16399540-16401509 lincRNA
ENSDARG00000097320 (si:ch211-217n8.6)
si:ch211-217n8.6 		ENSDART00000154324 (si:ch211-217n8.6-001) 16395382-16397078 lincRNA

Danio rerio Ensembl (Zv9)

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CIL_000567_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000062716-ENSG00000108423 CGP 9606 17:59707192-59892945
GeneTranscriptPositionBiotype
ENSG00000108423 (TUBD1)
tubulin, delta 1 		ENST00000325752 (TUBD1-201) 59859482-59892945 protein_coding
ENST00000340993 (TUBD1-002) 59860013-59892920 protein_coding
ENST00000346141 (TUBD1-005) 59859490-59892715 protein_coding
ENST00000376094 (TUBD1-003) 59860225-59891003 protein_coding
ENST00000394239 (TUBD1-001) 59860034-59892858 protein_coding
ENST00000539018 (TUBD1-006) 59860317-59892893 protein_coding
ENST00000587476 (TUBD1-011) 59874539-59878762 retained_intron
ENST00000588009 (TUBD1-010) 59863664-59881148 retained_intron
ENST00000588706 (TUBD1-013) 59886505-59892943 processed_transcript
ENST00000590498 (TUBD1-008) 59880938-59892935 protein_coding
ENST00000591548 (TUBD1-012) 59860322-59892941 nonsense_mediated_decay
ENST00000591611 (TUBD1-014) 59878301-59892899 processed_transcript
ENST00000592145 (TUBD1-007) 59890884-59892935 protein_coding
ENST00000592426 (TUBD1-004) 59860225-59891003 protein_coding
ENST00000593110 (TUBD1-009) 59863783-59892893 nonsense_mediated_decay
ENST00000613721 (TUBD1-202) 59859482-59892945 protein_coding
ENSG00000201524 (RNU6-450P)
RNA, U6 small nuclear 450, pseudogene 		ENST00000364654 (RNU6-450P-201) 59847438-59847544 snRNA
ENSG00000267637 (RP11-619I22.1)
 ENST00000590850 (RP11-619I22.1-001) 59784813-59785035 sense_intronic
ENSG00000270264 (NDUFB8P2)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 2 		ENST00000605113 (NDUFB8P2-001) 59885015-59885552 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000567_0001ENSDARG00000012450ENSDART00000018461ENSDART00000111753ENSDART00000129155ENSDARG00000058219ENSDART00000146735ENSDARG00000096955ENSDART00000135635ENSDART00000145547ENSDART00000148467ENSDART00000149845ENSDART00000153990ENSDART00000155019ENSDART00000155522ENSDARG00000097320ENSDART00000154324CIL_000567_0002ENSG00000108423ENST00000325752ENST00000340993ENST00000346141ENST00000376094ENST00000394239ENST00000539018ENST00000587476ENST00000588009ENST00000588706ENST00000590498ENST00000591548ENST00000591611ENST00000592145ENST00000592426ENST00000593110ENST00000613721ENSG00000201524ENST00000364654ENSG00000267637ENST00000590850ENSG00000270264ENST00000605113
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000567_0001ENSDARG00000012450ENSDART00000018461ENSDART00000111753ENSDARG00000058219ENSDART00000146735ENSDARG00000096955ENSDART00000135635ENSDART00000145547ENSDART00000153990ENSDART00000155019ENSDARG00000097320ENSDART00000154324CIL_000567_0002ENSG00000108423ENST00000325752ENST00000340993ENST00000346141ENST00000376094ENST00000394239ENST00000539018ENST00000587476ENST00000588706ENST00000590498ENST00000591611ENST00000592426ENST00000613721ENSG00000201524ENST00000364654ENSG00000267637ENST00000590850ENSG00000270264ENST00000605113
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012450 ENSDART00000018461 N/A N/A N/A 12.313±0.19 N/A N/A 4.556±0.36 11.909±0.00 4.533±0.00 N/A 6.752±0.00 N/A N/A N/A
ENSDART00000111753 N/A N/A N/A 7.987±1.32 N/A N/A 14.072±1.50 28.478±2.07 N/A N/A N/A N/A N/A N/A
ENSDART00000129155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000058219 ENSDART00000146735 N/A N/A N/A 0.551±0.15 N/A N/A 0.515±0.25 0.440±0.58 0.251±0.00 N/A 0.766±0.00 N/A N/A N/A
ENSDARG00000096955 ENSDART00000135635 N/A N/A N/A 0.359±0.00 N/A N/A 0.448±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145547 N/A N/A N/A 1.302±0.00 N/A N/A 0.815±0.23 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153990 N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155019 N/A N/A N/A 0.187±0.09 N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000097320 ENSDART00000154324 N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108423 ENST00000325752 N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A N/A N/A 2.219±0.94 N/A 1.809±0.00
ENST00000340993 N/A N/A N/A N/A 0.279±0.00 N/A 0.149±0.00 N/A 0.383±0.00 N/A N/A 1.261±0.88 0.842±0.00 1.681±0.00
ENST00000346141 N/A 0.363±0.00 N/A 0.429±0.04 0.674±0.00 0.290±0.00 0.778±0.00 0.638±0.11 N/A 0.722±0.41 0.857±0.00 1.162±0.08 0.580±0.07 N/A
ENST00000376094 0.691±0.00 0.505±0.00 0.580±0.00 N/A N/A N/A N/A N/A 0.798±0.00 1.092±0.00 1.391±0.00 0.849±0.00 N/A N/A
ENST00000394239 N/A N/A N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539018 N/A N/A N/A 0.724±0.00 1.099±0.00 N/A 0.531±0.13 N/A N/A N/A 0.606±0.00 1.560±0.00 N/A N/A
ENST00000587476 N/A 1.201±0.00 N/A N/A N/A 0.355±0.00 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000588009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588706 N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590498 N/A N/A N/A N/A N/A 0.857±0.00 N/A N/A N/A N/A N/A N/A N/A 3.005±0.00
ENST00000591548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591611 N/A N/A N/A 0.649±0.00 N/A 0.998±0.00 N/A N/A N/A N/A N/A 1.759±0.00 N/A N/A
ENST00000592145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592426 N/A N/A N/A 0.218±0.00 0.534±0.00 0.952±0.47 N/A N/A 0.637±0.00 1.355±0.00 N/A N/A N/A N/A
ENST00000593110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613721 N/A N/A N/A N/A N/A N/A N/A 0.592±0.00 N/A N/A N/A 0.422±0.00 0.519±0.00 1.136±0.54
ENSG00000201524 ENST00000364654 N/A 0.779±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.641±0.00 N/A N/A
ENSG00000267637 ENST00000590850 N/A 0.033±0.00 N/A N/A N/A N/A 0.032±0.00 N/A 0.133±0.00 N/A N/A N/A N/A 0.062±0.00
ENSG00000270264 ENST00000605113 N/A 0.304±0.00 N/A 0.160±0.12 1.501±1.36 N/A 0.087±0.05 0.659±0.52 2.521±0.00 7.196±0.00 N/A 0.631±0.81 0.267±0.00 N/A

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