C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, delta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592426 TUBD1-004 ENSG00000108423 9606 - 17:59860225-59891003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungENST00000592426
Transcript ID Brain Breast Colon Liver Lung
ENST00000592426 0.218±0.00 0.534±0.00 0.952±0.47 0.637±0.00 1.355±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000567 CIL_000567_0002 CGP 17:59707192-59892945
CIL_00056A CIL_00056A_0002 CGP 17:59859482-59950564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005814 TAS centriole
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167178 Tubd1-201 protein_coding Mus_musculus 0 1358
ENSMUST00000069503 Tubd1-003 protein_coding Mus_musculus 0 1358
ENSMUST00000020821 Tubd1-002 protein_coding Mus_musculus 0 819
ENSMUST00000108030 Tubd1-001 protein_coding Mus_musculus 0 819
ENSMUST00000164931 Tubd1-004 protein_coding Mus_musculus 0 281

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