C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005883-ENSDARG00000070780 CGP 7955 3:18972686-19032535
GeneTranscriptPositionBiotype
ENSDARG00000005883 (rfx1a)
regulatory factor X, 1a (influences HLA class II expression) 		ENSDART00000012335 (rfx1a-001) 18974120-19022549 protein_coding
ENSDART00000129205 (rfx1a-201) 18972686-19016122 protein_coding
ENSDART00000131503 (rfx1a-003) 19006935-19022469 protein_coding
ENSDART00000131759 (rfx1a-002) 19009221-19015838 retained_intron
ENSDARG00000070780 (rln3a)
relaxin 3a 		ENSDART00000087803 (rln3a-001) 19029074-19032535 protein_coding
CIL_00058X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132005-ENSG00000171136 CGP 9606 19:13961538-14031042
GeneTranscriptPositionBiotype
ENSG00000132005 (HGNC:9982)
regulatory factor X, 1 (influences HLA class II expression) 		ENST00000254325 (HGNC:9982-001) 13961538-14006285 protein_coding
ENST00000586913 (HGNC:9982-006) 13998168-14007039 processed_transcript
ENST00000588520 (HGNC:9982-007) 13963704-13964055 retained_intron
ENST00000588885 (HGNC:9982-005) 13983313-14006262 protein_coding
ENST00000589239 (HGNC:9982-002) 13969640-14006322 retained_intron
ENST00000589760 (HGNC:9982-004) 13983069-14006267 retained_intron
ENST00000589937 (HGNC:9982-003) 13983028-14006289 retained_intron
ENSG00000171136 (RLN3)
relaxin 3 		ENST00000431365 (RLN3-001) 14028148-14031042 protein_coding
ENST00000585987 (RLN3-002) 14028205-14030948 protein_coding
ENSG00000267670 (CTB-55O6.4)
 ENST00000590528 (CTB-55O6.4-001) 14030855-14031557 antisense
ENSG00000275091 (CTB-55O6.13)
 ENST00000622575 (CTB-55O6.13-001) 14006422-14006773 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058X_0001ENSDARG00000005883ENSDART00000012335ENSDART00000129205ENSDART00000131503ENSDART00000131759ENSDARG00000070780ENSDART00000087803CIL_00058X_0002ENSG00000132005ENST00000254325ENST00000586913ENST00000588520ENST00000588885ENST00000589239ENST00000589760ENST00000589937ENSG00000171136ENST00000431365ENST00000585987ENSG00000267670ENST00000590528ENSG00000275091ENST00000622575
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058X_0001ENSDARG00000005883ENSDART00000012335ENSDART00000129205ENSDARG00000070780ENSDART00000087803CIL_00058X_0002ENSG00000132005ENST00000254325ENST00000589239ENST00000589760ENSG00000171136ENST00000431365ENST00000585987ENSG00000267670ENST00000590528ENSG00000275091ENST00000622575
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005883 ENSDART00000012335 N/A N/A N/A 2.152±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000129205 N/A N/A N/A 3.404±1.59 N/A N/A 0.233±0.02 1.442±0.04 0.099±0.00 N/A N/A N/A N/A N/A
ENSDART00000131503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070780 ENSDART00000087803 N/A N/A N/A 16.626±4.93 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132005 ENST00000254325 3.692±0.00 3.212±0.00 0.416±0.00 1.384±0.00 2.474±2.22 0.560±0.13 1.312±1.05 0.688±0.32 1.421±0.00 0.071±0.00 3.010±0.00 2.394±2.06 6.005±0.50 7.012±3.72
ENST00000586913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589239 N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A
ENST00000589760 N/A N/A 0.739±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171136 ENST00000431365 N/A 0.319±0.00 N/A N/A N/A N/A 0.149±0.00 N/A 0.049±0.00 N/A N/A N/A 0.292±0.00 N/A
ENST00000585987 N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 0.843±0.47
ENSG00000267670 ENST00000590528 N/A 0.268±0.00 N/A N/A 0.124±0.00 N/A 0.225±0.00 0.279±0.00 0.253±0.00 N/A N/A 0.101±0.00 0.161±0.09 1.003±0.00
ENSG00000275091 ENST00000622575 N/A N/A N/A N/A N/A 1.086±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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