C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: regulatory factor X, 1a (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000129205 rfx1a-201 ENSDARG00000005883 7955 - 3:18972686-19016122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000129205
Transcript ID Brain Heart Kidney Liver
ENSDART00000129205 3.404±1.59 0.233±0.02 1.442±0.04 0.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058X CIL_00058X_0001 CGP 3:18972686-19032535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303657 RFX2-002 protein_coding Homo_sapiens 0 477
ENST00000316059 ZFP91-003 protein_coding Homo_sapiens 0.0003 53
ENST00000359161 RFX2-004 protein_coding Homo_sapiens 0 477
ENST00000389919 ZFP91-CNTF-001 nonsense_mediated_decay Homo_sapiens 0.0002 53
ENST00000422974 ZFP91-CNTF-002 nonsense_mediated_decay Homo_sapiens 0.0001 53
ENST00000589340 RFX2-019 protein_coding Homo_sapiens 4e-24 115
ENST00000592546 RFX2-003 protein_coding Homo_sapiens 0 477

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