C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183379-ENSG00000119655 CGP 9606 14:74405893-74494177
GeneTranscriptPositionBiotype
ENSG00000119655 (NPC2)
Niemann-Pick disease, type C2 		ENST00000238633 (NPC2-008) 74479942-74493291 protein_coding
ENST00000434013 (NPC2-003) 74476192-74493307 protein_coding
ENST00000541064 (NPC2-002) 74479223-74493281 protein_coding
ENST00000553490 (NPC2-006) 74480082-74493339 protein_coding
ENST00000554482 (NPC2-009) 74479942-74493242 nonsense_mediated_decay
ENST00000555592 (NPC2-005) 74484411-74493608 protein_coding
ENST00000555619 (NPC2-001) 74479933-74493512 protein_coding
ENST00000556009 (NPC2-004) 74480096-74494177 protein_coding
ENST00000557510 (NPC2-007) 74480187-74493347 protein_coding
ENSG00000165898 (ISCA2)
iron-sulfur cluster assembly 2 		ENST00000298818 (ISCA2-002) 74493756-74495366 protein_coding
ENST00000554924 (ISCA2-003) 74493765-74495130 protein_coding
ENST00000555139 (ISCA2-004) 74493772-74495022 retained_intron
ENST00000556816 (ISCA2-001) 74493720-74497106 protein_coding
ENSG00000258769 (RAP1AP)
RAP1A, member of RAS oncogene family pseudogene 		ENST00000554629 (RAP1AP-001) 74482985-74483435 processed_pseudogene
ENSG00000259005 (RP3-449M8.6)
 ENST00000556370 (RP3-449M8.6-001) 74474007-74474864 lincRNA
ENSG00000270000 (RP3-449M8.9)
 ENST00000602790 (RP3-449M8.9-001) 74471930-74472360 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005BB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071234-ENSMUSG00000021242 CGP 10090 12:84677278-84773112
GeneTranscriptPositionBiotype
ENSMUSG00000021242 (Npc2)
Niemann-Pick type C2 		ENSMUST00000021668 (Npc2-201) 84754560-84773112 protein_coding
ENSMUSG00000071234 (Syndig1l)
synapse differentiation inducing 1 like 		ENSMUST00000095550 (Syndig1l-201) 84677278-84698807 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BB_0001ENSG00000119655ENST00000238633ENST00000434013ENST00000541064ENST00000553490ENST00000554482ENST00000555592ENST00000555619ENST00000556009ENST00000557510ENSG00000165898ENST00000298818ENST00000554924ENST00000555139ENST00000556816ENSG00000258769ENST00000554629ENSG00000259005ENST00000556370ENSG00000270000ENST00000602790CIL_0005BB_0002ENSMUSG00000021242ENSMUST00000021668ENSMUSG00000071234ENSMUST00000095550
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BB_0001ENSG00000119655ENST00000238633ENST00000553490ENST00000554482ENST00000555592ENST00000555619ENST00000556009ENSG00000165898ENST00000298818ENST00000556816ENSG00000258769ENST00000554629ENSG00000259005ENST00000556370ENSG00000270000ENST00000602790CIL_0005BB_0002ENSMUSG00000021242ENSMUST00000021668ENSMUSG00000071234ENSMUST00000095550
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119655 ENST00000238633 70.637±0.00 56.410±0.00 4.131±0.00 10.351±3.80 24.103±16.20 24.569±0.00 13.376±10.15 54.915±0.00 19.934±8.36 92.792±62.76 8.863±0.00 33.330±21.28 72.671±34.87 70.138±14.85
ENST00000434013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553490 N/A N/A N/A N/A N/A N/A N/A N/A 19.283±0.00 N/A N/A N/A N/A N/A
ENST00000554482 N/A 47.164±0.00 N/A 19.771±0.00 53.446±0.00 N/A 1.686±0.00 4.324±0.00 N/A N/A N/A N/A N/A 70.757±0.00
ENST00000555592 N/A N/A 5.696±0.00 N/A 13.413±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555619 66.870±0.00 41.299±0.00 N/A 21.290±0.00 6.501±0.00 24.978±16.66 7.096±6.25 23.540±15.85 8.763±0.00 15.255±0.00 6.325±4.60 110.447±84.95 169.573±13.30 75.716±0.28
ENST00000556009 53.223±0.00 45.505±0.00 N/A 21.286±0.00 N/A 51.926±0.00 20.163±0.00 75.831±0.00 28.226±0.00 165.819±0.00 18.366±0.00 N/A N/A 134.210±0.00
ENST00000557510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165898 ENST00000298818 N/A N/A N/A N/A N/A N/A 12.741±0.00 N/A N/A N/A 4.722±3.14 N/A N/A N/A
ENST00000554924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556816 N/A N/A 1.200±0.00 2.050±0.00 1.112±0.00 1.563±0.00 0.629±0.00 N/A N/A N/A 0.580±0.00 0.459±0.00 N/A N/A
ENSG00000258769 ENST00000554629 0.025±0.00 0.204±0.00 N/A 0.417±0.39 N/A 0.023±0.00 0.070±0.00 0.050±0.00 N/A N/A N/A 0.107±0.09 N/A 0.230±0.00
ENSG00000259005 ENST00000556370 0.033±0.00 0.313±0.00 N/A N/A 0.606±0.00 0.301±0.00 0.069±0.01 1.318±1.14 0.060±0.00 1.565±0.00 N/A 0.090±0.00 0.083±0.00 0.304±0.05
ENSG00000270000 ENST00000602790 0.494±0.00 0.029±0.00 0.150±0.00 0.244±0.00 0.242±0.00 0.533±0.00 N/A N/A N/A 1.179±0.00 N/A 0.460±0.06 0.267±0.11 0.459±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021242 ENSMUST00000021668 205.901±90.17 78.124±8.46 34.848±8.02 6.147±3.35 141.620±47.89 91.812±8.01 18.175±4.00 57.997±4.47 24.941±5.08 340.164±91.13 7.844±1.00 88.566±22.83 58.010±25.75 16.851±10.05
ENSMUSG00000071234 ENSMUST00000095550 N/A 0.024±0.01 0.013±0.00 1.796±0.72 0.286±0.11 0.178±0.12 N/A 0.020±0.00 0.042±0.01 0.026±0.01 0.023±0.00 0.037±0.02 0.082±0.06 3.217±1.36

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