C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005E8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000027899-ENSDARG00000042291 CGP 7955 19:42373066-42438972
GeneTranscriptPositionBiotype
ENSDARG00000027899 (shfm1)
split hand/foot malformation (ectrodactyly) type 1 		ENSDART00000038038 (shfm1-201) 42373066-42376790 protein_coding
ENSDARG00000042291 (dlx6a)
distal-less homeobox gene 6a 		ENSDART00000102778 (dlx6a-001) 42436801-42438972 protein_coding
ENSDART00000148732 (dlx6a-003) 42391450-42438798 protein_coding
ENSDART00000149799 (dlx6a-002) 42391450-42438855 protein_coding
CIL_0005E8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042541-ENSMUSG00000029754 CGP 10090 6:6557294-6868568
GeneTranscriptPositionBiotype
ENSMUSG00000029754 (Dlx6)
distal-less homeobox 6 		ENSMUST00000031768 (Dlx6-002) 6863797-6867967 protein_coding
ENSMUST00000160937 (Dlx6-001) 6863334-6868568 protein_coding
ENSMUST00000171311 (Dlx6-201) 6863334-6867970 protein_coding
ENSMUST00000172943 (Dlx6-004) 6863798-6865430 retained_intron
ENSMUSG00000042541 (Shfm1)
split hand/foot malformation (ectrodactyly) type 1 		ENSMUST00000041111 (Shfm1-001) 6557294-6578658 protein_coding
ENSMUSG00000090063 (Dlx6os1)
distal-less homeobox 6, opposite strand 1 		ENSMUST00000159568 (Dlx6os1-001) 6820543-6869531 antisense
ENSMUST00000159827 (Dlx6os1-002) 6820189-6861591 antisense
ENSMUSG00000093581 (Gm18006)
predicted gene, 18006 		ENSMUST00000177411 (Gm18006-001) 6645334-6647278 processed_pseudogene
ENSMUSG00000093651 (Gm5873)
predicted gene 5873 		ENSMUST00000177157 (Gm5873-001) 6735427-6736492 processed_pseudogene
ENSMUSG00000093675 (Gm20618)
predicted gene 20618 		ENSMUST00000177161 (Gm20618-001) 6633486-6691521 lincRNA
ENSMUST00000177482 (Gm20618-002) 6603712-6684806 lincRNA
ENSMUSG00000094868 (Dlx6os2)
distal-less homeobox 6, opposite strand 2 		ENSMUST00000178206 (Dlx6os2-001) 6863797-6865150 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005E8_0001ENSDARG00000027899ENSDART00000038038ENSDARG00000042291ENSDART00000102778ENSDART00000148732ENSDART00000149799CIL_0005E8_0002ENSMUSG00000029754ENSMUST00000031768ENSMUST00000160937ENSMUST00000171311ENSMUST00000172943ENSMUSG00000042541ENSMUST00000041111ENSMUSG00000090063ENSMUST00000159568ENSMUST00000159827ENSMUSG00000093581ENSMUST00000177411ENSMUSG00000093651ENSMUST00000177157ENSMUSG00000093675ENSMUST00000177161ENSMUST00000177482ENSMUSG00000094868ENSMUST00000178206
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005E8_0001ENSDARG00000027899ENSDART00000038038ENSDARG00000042291ENSDART00000102778ENSDART00000148732ENSDART00000149799CIL_0005E8_0002ENSMUSG00000029754ENSMUST00000031768ENSMUST00000160937ENSMUST00000171311ENSMUSG00000042541ENSMUST00000041111ENSMUSG00000090063ENSMUST00000159568ENSMUST00000159827ENSMUSG00000093581ENSMUST00000177411ENSMUSG00000093651ENSMUST00000177157ENSMUSG00000093675ENSMUST00000177161ENSMUST00000177482ENSMUSG00000094868ENSMUST00000178206
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000027899 ENSDART00000038038 N/A N/A N/A 37.743±8.75 N/A N/A 25.877±8.08 17.949±2.65 5.659±0.00 N/A 48.297±0.00 N/A N/A N/A
ENSDARG00000042291 ENSDART00000102778 N/A N/A N/A 2.093±2.19 N/A N/A N/A 0.789±0.00 0.045±0.00 N/A 0.365±0.00 N/A N/A N/A
ENSDART00000148732 N/A N/A N/A N/A N/A N/A N/A 1.621±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000149799 N/A N/A N/A 1.791±0.22 N/A N/A N/A 2.524±0.00 0.294±0.00 N/A 0.351±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029754 ENSMUST00000031768 4.818±2.01 0.101±0.00 N/A N/A N/A N/A 0.014±0.00 N/A 0.007±0.00 N/A 0.079±0.00 0.780±0.51 N/A 3.310±0.82
ENSMUST00000160937 0.309±0.29 0.043±0.03 0.013±0.00 1.352±0.84 0.088±0.04 0.151±0.07 0.016±0.00 0.033±0.02 0.036±0.03 0.074±0.04 0.023±0.00 0.631±0.39 0.027±0.01 0.236±0.01
ENSMUST00000171311 0.822±0.82 N/A N/A 4.267±1.99 N/A N/A N/A N/A 0.003±0.00 N/A N/A 0.347±0.09 0.018±0.01 1.288±0.49
ENSMUST00000172943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042541 ENSMUST00000041111 20.140±5.83 16.411±1.52 40.598±1.84 13.634±5.00 14.402±5.17 26.797±3.04 20.897±4.34 24.445±4.75 37.267±18.12 30.813±1.46 25.093±4.54 25.641±4.60 36.321±16.85 25.732±3.90
ENSMUSG00000090063 ENSMUST00000159568 0.386±0.06 0.074±0.00 N/A 1.295±0.00 N/A N/A 0.012±0.00 N/A 0.005±0.00 N/A N/A 0.168±0.13 0.003±0.00 N/A
ENSMUST00000159827 1.220±0.15 N/A N/A 0.402±0.00 N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.123±0.07 0.003±0.00 0.108±0.00
ENSMUSG00000093581 ENSMUST00000177411 0.096±0.00 N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093651 ENSMUST00000177157 0.713±0.30 0.349±0.22 N/A 0.105±0.02 0.322±0.15 0.414±0.19 0.051±0.03 0.157±0.10 0.099±0.04 0.376±0.14 N/A 1.037±0.53 0.010±0.01 0.411±0.12
ENSMUSG00000093675 ENSMUST00000177161 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A 0.090±0.00 N/A 0.466±0.07 N/A N/A
ENSMUST00000177482 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.031±0.02 N/A
ENSMUSG00000094868 ENSMUST00000178206 N/A 0.149±0.02 N/A 0.770±0.00 N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A

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