C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005HV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059658-ENSDARG00000007944 CGP 7955 5:57529255-57683358
GeneTranscriptPositionBiotype
ENSDARG00000007944 (lhx1b)
LIM homeobox 1b 		ENSDART00000021159 (lhx1b-001) 57677620-57683358 protein_coding
ENSDARG00000059658 (mrm1)
mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) 		ENSDART00000083137 (mrm1-201) 57529255-57534534 protein_coding
ENSDARG00000093252 (si:dkey-234k7.1)
si:dkey-234k7.1 		ENSDART00000140462 (si:dkey-234k7.1-001) 57665372-57667350 processed_transcript
ENSDARG00000094314 (si:dkey-234k7.2)
si:dkey-234k7.2 		ENSDART00000134236 (si:dkey-234k7.2-001) 57655920-57657919 processed_transcript
CIL_0005HV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000278619-ENSG00000273706 CGP 9606 17:36601572-36944612
GeneTranscriptPositionBiotype
ENSG00000273706 (LHX1)
LIM homeobox 1 		ENST00000614239 (LHX1-001) 36937475-36944612 protein_coding
ENST00000616237 (LHX1-003) 36938460-36941394 retained_intron
ENST00000619297 (LHX1-005) 36936785-36937846 processed_transcript
ENST00000619939 (LHX1-002) 36937635-36941531 retained_intron
ENST00000621767 (LHX1-004) 36942298-36943685 protein_coding
ENSG00000275613 (CTD-3194G12.2)
 ENST00000610398 (CTD-3194G12.2-001) 36722583-36726340 lincRNA
ENSG00000275720 (CTB-75G16.3)
 ENST00000618067 (CTB-75G16.3-001) 36634069-36634698 lincRNA
ENSG00000276508 (CTD-3194G12.1)
 ENST00000616810 (CTD-3194G12.1-001) 36684754-36685129 lincRNA
ENSG00000276707 (RP11-445F12.2)
 ENST00000614759 (RP11-445F12.2-001) 36940049-36943456 antisense
ENSG00000277268 (RP11-445F12.1)
 ENST00000612281 (RP11-445F12.1-002) 36907288-36936652 antisense
ENST00000614277 (RP11-445F12.1-003) 36906995-36936658 antisense
ENST00000616341 (RP11-445F12.1-004) 36861674-36936661 antisense
ENST00000621428 (RP11-445F12.1-001) 36932109-36936622 antisense
ENSG00000278619 (MRM1)
mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) 		ENST00000612760 (MRM1-002) 36601962-36608964 protein_coding
ENST00000614766 (MRM1-001) 36601572-36608971 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005HV_0001ENSDARG00000007944ENSDART00000021159ENSDARG00000059658ENSDART00000083137ENSDARG00000093252ENSDART00000140462ENSDARG00000094314ENSDART00000134236CIL_0005HV_0002ENSG00000273706ENST00000614239ENST00000616237ENST00000619297ENST00000619939ENST00000621767ENSG00000275613ENST00000610398ENSG00000275720ENST00000618067ENSG00000276508ENST00000616810ENSG00000276707ENST00000614759ENSG00000277268ENST00000612281ENST00000614277ENST00000616341ENST00000621428ENSG00000278619ENST00000612760ENST00000614766
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005HV_0001ENSDARG00000007944ENSDART00000021159ENSDARG00000059658ENSDART00000083137ENSDARG00000093252ENSDART00000140462ENSDARG00000094314ENSDART00000134236CIL_0005HV_0002ENSG00000273706ENST00000614239ENST00000619297ENST00000619939ENST00000621767ENSG00000275613ENST00000610398ENSG00000275720ENST00000618067ENSG00000276508ENST00000616810ENSG00000276707ENST00000614759ENSG00000277268ENST00000612281ENST00000614277ENST00000621428ENSG00000278619ENST00000612760ENST00000614766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007944 ENSDART00000021159 N/A N/A N/A 0.564±0.21 N/A N/A 0.110±0.03 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000059658 ENSDART00000083137 N/A N/A N/A 1.539±0.99 N/A N/A 2.517±0.67 5.552±0.00 0.725±0.00 N/A 0.688±0.00 N/A N/A N/A
ENSDARG00000093252 ENSDART00000140462 N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A 0.475±0.00 N/A N/A N/A N/A N/A
ENSDARG00000094314 ENSDART00000134236 N/A N/A N/A 0.171±0.01 N/A N/A 0.423±0.25 0.316±0.20 N/A N/A 0.119±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000273706 ENST00000614239 N/A N/A 0.843±0.00 0.022±0.00 N/A N/A N/A 4.362±0.00 N/A N/A N/A 0.531±0.00 0.016±0.00 0.152±0.05
ENST00000616237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000619939 N/A N/A N/A N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621767 N/A N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275613 ENST00000610398 N/A N/A N/A 0.457±0.00 N/A N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A 0.642±0.13
ENSG00000275720 ENST00000618067 0.049±0.00 0.147±0.00 0.156±0.00 0.110±0.00 N/A 0.226±0.00 N/A 0.267±0.00 N/A N/A N/A 0.294±0.13 0.095±0.01 0.254±0.00
ENSG00000276508 ENST00000616810 N/A 0.107±0.00 0.884±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.519±0.13
ENSG00000276707 ENST00000614759 N/A N/A N/A 0.086±0.00 N/A N/A N/A 7.457±0.00 N/A N/A N/A N/A 0.128±0.00 N/A
ENSG00000277268 ENST00000612281 N/A N/A 0.717±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00
ENST00000616341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621428 N/A N/A N/A N/A N/A N/A N/A 13.323±0.00 N/A N/A N/A 0.731±0.00 0.050±0.00 0.208±0.08
ENSG00000278619 ENST00000612760 N/A N/A N/A 0.705±0.19 N/A 0.370±0.00 0.084±0.00 N/A 0.905±0.08 0.926±0.00 0.628±0.00 N/A N/A N/A
ENST00000614766 2.295±0.00 2.843±0.00 0.077±0.00 0.733±0.33 1.634±1.05 0.788±0.34 1.554±0.00 3.835±0.00 1.956±0.00 0.473±0.38 2.224±0.00 2.943±1.78 3.908±1.42 2.202±0.07

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