C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005JH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129744-ENSG00000129749 CGP 9606 11:3645128-3671384
GeneTranscriptPositionBiotype
ENSG00000110713 (NUP98)
nucleoporin 98kDa 		ENST00000324932 (NUP98-001) 3675010-3797792 protein_coding
ENST00000355260 (NUP98-013) 3675799-3797458 protein_coding
ENST00000359171 (NUP98-201) 3675011-3797792 protein_coding
ENST00000397004 (NUP98-002) 3711553-3797541 protein_coding
ENST00000397007 (NUP98-004) 3711835-3797547 protein_coding
ENST00000397013 (NUP98-018) 3731483-3768680 nonsense_mediated_decay
ENST00000429801 (NUP98-003) 3675878-3706535 protein_coding
ENST00000461047 (NUP98-006) 3760141-3762960 retained_intron
ENST00000469881 (NUP98-009) 3676017-3679768 retained_intron
ENST00000482690 (NUP98-010) 3676269-3676710 retained_intron
ENST00000483285 (NUP98-007) 3699009-3700814 retained_intron
ENST00000488828 (NUP98-008) 3695471-3697260 processed_transcript
ENST00000524563 (NUP98-014) 3679638-3695558 nonsense_mediated_decay
ENST00000527104 (NUP98-019) 3725103-3760594 protein_coding
ENST00000529063 (NUP98-015) 3695519-3702651 nonsense_mediated_decay
ENST00000529379 (NUP98-017) 3731390-3762933 protein_coding
ENST00000530345 (NUP98-011) 3693057-3695565 retained_intron
ENST00000530516 (NUP98-016) 3719488-3721039 retained_intron
ENST00000532475 (NUP98-012) 3775894-3797552 protein_coding
ENST00000533346 (NUP98-020) 3671083-3679687 protein_coding
ENSG00000129744 (ART1)
ADP-ribosyltransferase 1 		ENST00000250693 (ART1-001) 3645131-3664416 protein_coding
ENST00000529556 (ART1-003) 3645128-3659612 processed_transcript
ENSG00000200201 (Y_RNA)
Y RNA 		ENST00000363331 (Y_RNA.1-322) 3665164-3665259 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005JH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030996-ENSMUSG00000066279 CGP 10090 7:102101743-102116713
GeneTranscriptPositionBiotype
ENSMUSG00000030996 (Art1)
ADP-ribosyltransferase 1 		ENSMUST00000033300 (Art1-201) 102101743-102111148 protein_coding
ENSMUSG00000066279 (Chrna10)
cholinergic receptor, nicotinic, alpha polypeptide 10 		ENSMUST00000084830 (Chrna10-201) 102111266-102116713 protein_coding
ENSMUSG00000070424 (Art5)
ADP-ribosyltransferase 5 		ENSMUST00000094128 (Art5-001) 102096879-102102845 protein_coding
ENSMUST00000106934 (Art5-004) 102097114-102099939 protein_coding
ENSMUST00000106935 (Art5-003) 102097114-102099493 protein_coding
ENSMUST00000106937 (Art5-002) 102096880-102100229 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005JH_0001ENSG00000110713ENST00000324932ENST00000355260ENST00000359171ENST00000397004ENST00000397007ENST00000397013ENST00000429801ENST00000461047ENST00000469881ENST00000482690ENST00000483285ENST00000488828ENST00000524563ENST00000527104ENST00000529063ENST00000529379ENST00000530345ENST00000530516ENST00000532475ENST00000533346ENSG00000129744ENST00000250693ENST00000529556ENSG00000200201ENST00000363331CIL_0005JH_0002ENSMUSG00000030996ENSMUST00000033300ENSMUSG00000066279ENSMUST00000084830ENSMUSG00000070424ENSMUST00000094128ENSMUST00000106934ENSMUST00000106935ENSMUST00000106937
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005JH_0001ENSG00000110713ENST00000324932ENST00000355260ENST00000359171ENST00000397004ENST00000397007ENST00000429801ENSG00000129744ENST00000250693ENST00000529556ENSG00000200201ENST00000363331CIL_0005JH_0002ENSMUSG00000030996ENSMUST00000033300ENSMUSG00000066279ENSMUST00000084830ENSMUSG00000070424ENSMUST00000094128ENSMUST00000106934ENSMUST00000106935ENSMUST00000106937
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110713 ENST00000324932 11.998±0.00 N/A 1.299±0.00 1.544±0.00 4.234±0.84 4.294±0.49 2.906±2.25 6.060±4.02 2.497±0.52 5.355±2.85 1.496±0.00 10.126±5.25 5.508±1.01 26.653±3.08
ENST00000355260 N/A N/A 1.233±0.00 N/A 1.735±0.00 1.226±0.00 0.587±0.00 N/A 1.828±0.00 N/A N/A N/A N/A 10.789±1.11
ENST00000359171 N/A N/A N/A 1.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397004 N/A N/A N/A N/A 4.144±0.00 N/A 0.765±0.00 N/A 2.225±0.00 N/A 2.383±0.00 7.470±0.00 N/A N/A
ENST00000397007 N/A 6.970±0.00 1.195±0.00 2.243±0.96 3.571±0.00 3.100±0.10 3.018±1.71 2.776±0.00 2.310±0.77 4.272±0.00 10.893±0.00 8.141±4.62 6.082±0.39 16.189±0.00
ENST00000397013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429801 N/A N/A N/A N/A N/A N/A N/A N/A 2.833±0.00 N/A N/A N/A N/A 25.911±0.00
ENST00000461047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000129744 ENST00000250693 N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A 3.505±0.00 0.042±0.00 N/A 0.090±0.00
ENST00000529556 N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A N/A 5.586±0.00 N/A N/A N/A
ENSG00000200201 ENST00000363331 N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030996 ENSMUST00000033300 0.125±0.01 0.080±0.06 0.051±0.03 0.108±0.04 15.306±15.77 0.068±0.03 87.646±21.06 0.774±0.74 0.103±0.14 4.728±1.37 225.798±21.04 0.188±0.13 0.030±0.01 3.420±0.98
ENSMUSG00000066279 ENSMUST00000084830 0.033±0.01 0.149±0.05 0.012±0.00 0.016±0.00 0.256±0.19 0.373±0.09 0.978±0.03 0.017±0.01 0.012±0.01 0.266±0.07 3.499±0.49 0.113±0.05 0.019±0.01 0.191±0.09
ENSMUSG00000070424 ENSMUST00000094128 0.229±0.00 N/A 0.107±0.05 N/A 1.004±0.96 0.313±0.03 N/A 0.070±0.05 0.034±0.02 0.069±0.00 N/A 0.207±0.10 0.275±0.14 N/A
ENSMUST00000106934 0.070±0.00 0.120±0.00 N/A 0.050±0.01 0.987±0.00 0.221±0.10 N/A N/A 0.040±0.02 0.047±0.00 N/A 0.107±0.00 0.159±0.07 N/A
ENSMUST00000106935 N/A 0.162±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.22 0.369±0.10 N/A
ENSMUST00000106937 0.233±0.09 0.087±0.00 N/A 0.124±0.08 0.355±0.32 0.175±0.05 N/A 0.106±0.01 0.070±0.02 0.147±0.07 N/A 0.324±0.19 0.181±0.06 14.423±3.69

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