C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 98kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110713 NUP98 9606 - 11:3671083-3797792 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324932 NUP98-001 3675010-3797792 protein_coding
  ENST00000355260 NUP98-013 3675799-3797458 protein_coding
  ENST00000359171 NUP98-201 3675011-3797792 protein_coding
  ENST00000397004 NUP98-002 3711553-3797541 protein_coding
  ENST00000397007 NUP98-004 3711835-3797547 protein_coding
  ENST00000397013 NUP98-018 3731483-3768680 nonsense_mediated_decay
  ENST00000429801 NUP98-003 3675878-3706535 protein_coding
  ENST00000461047 NUP98-006 3760141-3762960 retained_intron
  ENST00000469881 NUP98-009 3676017-3679768 retained_intron
  ENST00000482690 NUP98-010 3676269-3676710 retained_intron
  ENST00000483285 NUP98-007 3699009-3700814 retained_intron
  ENST00000488828 NUP98-008 3695471-3697260 processed_transcript
  ENST00000524563 NUP98-014 3679638-3695558 nonsense_mediated_decay
  ENST00000527104 NUP98-019 3725103-3760594 protein_coding
  ENST00000529063 NUP98-015 3695519-3702651 nonsense_mediated_decay
  ENST00000529379 NUP98-017 3731390-3762933 protein_coding
  ENST00000530345 NUP98-011 3693057-3695565 retained_intron
  ENST00000530516 NUP98-016 3719488-3721039 retained_intron
  ENST00000532475 NUP98-012 3775894-3797552 protein_coding
  ENST00000533346 NUP98-020 3671083-3679687 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324932ENST00000355260ENST00000359171ENST00000397004ENST00000397007ENST00000429801
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324932 11.998±0.00 N/A 1.299±0.00 1.544±0.00 4.234±0.84 4.294±0.49 2.906±2.25 6.060±4.02 2.497±0.52 5.355±2.85 1.496±0.00 10.126±5.25 5.508±1.01 26.653±3.08
ENST00000355260 N/A N/A 1.233±0.00 N/A 1.735±0.00 1.226±0.00 0.587±0.00 N/A 1.828±0.00 N/A N/A N/A N/A 10.789±1.11
ENST00000359171 N/A N/A N/A 1.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397004 N/A N/A N/A N/A 4.144±0.00 N/A 0.765±0.00 N/A 2.225±0.00 N/A 2.383±0.00 7.470±0.00 N/A N/A
ENST00000397007 N/A 6.970±0.00 1.195±0.00 2.243±0.96 3.571±0.00 3.100±0.10 3.018±1.71 2.776±0.00 2.310±0.77 4.272±0.00 10.893±0.00 8.141±4.62 6.082±0.39 16.189±0.00
ENST00000429801 N/A N/A N/A N/A N/A N/A N/A N/A 2.833±0.00 N/A N/A N/A N/A 25.911±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JH CIL_0005JH_0001 CGP 11:3645128-3671384
CIL_0005K0 CIL_0005K0_0001 CGP 11:3665587-3797792
CIL_0005K9 CIL_0005K9_0001 CGP 11:3671083-3826371

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000059 NAS protein import into nucleus, docking
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005643 NAS:IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006260 IMP DNA replication
GO:0006810 IEA transport
GO:0006913 TAS nucleocytoplasmic transport
GO:0006999 NAS nuclear pore organization
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0017056 IMP structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031080 NAS nuclear pore outer ring
GO:0031965 IDA nuclear membrane
GO:0034399 IDA nuclear periphery
GO:0042277 IEA peptide binding
GO:0042405 IDA nuclear inclusion body
GO:0044281 TAS small molecule metabolic process
GO:0044615 IDA nuclear pore nuclear basket
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074955 nup98 nucleoporin 98 protein_coding Danio_rerio
ENSMUSG00000063550 Nup98 nucleoporin 98 protein_coding Mus_musculus

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