C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha polypeptide 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084830 Chrna10-201 ENSMUSG00000066279 10090 - 7:102111266-102116713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084830 0.033±0.01 0.149±0.05 0.012±0.00 0.016±0.00 0.256±0.19 0.373±0.09 0.978±0.03 0.017±0.01 0.012±0.01 0.266±0.07 3.499±0.49 0.113±0.05 0.019±0.01 0.191±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JH CIL_0005JH_0002 CGP 7:102101743-102116713
CIL_0005K0 CIL_0005K0_0002 CGP 7:102111266-102210120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IMP acetylcholine-activated cation-selective channel activity
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006812 IMP cation transport
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007271 IMP synaptic transmission, cholinergic
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030424 IEA axon
GO:0042472 IMP inner ear morphogenesis
GO:0043204 IEA perikaryon
GO:0045211 IEA postsynaptic membrane
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000250699 CHRNA10-001 protein_coding Homo_sapiens 0 1443
ENST00000526599 CHRNA10-004 nonsense_mediated_decay Homo_sapiens 0 1203
ENST00000534359 CHRNA10-003 protein_coding Homo_sapiens 0 1203

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