C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0005N6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065308-ENSG00000096092 CGP 9606 6:52497402-52686588
GeneTranscriptPositionBiotype
ENSG00000065308 (TRAM2)
translocation associated membrane protein 2
ENST00000182527 (TRAM2-001) 52497402-52576915 protein_coding
ENSG00000096092 (TMEM14A)
transmembrane protein 14A
ENST00000211314 (TMEM14A-001) 52671109-52686588 protein_coding
ENSG00000216775 (RP1-152L7.5)
ENST00000406724 (RP1-152L7.5-001) 52665274-52666878 transcribed_unprocessed_pseudogene
ENST00000602367 (RP1-152L7.5-002) 52665148-52669155 retained_intron
ENSG00000225791 (TRAM2-AS1)
TRAM2 antisense RNA 1 (head to head)
ENST00000453216 (TRAM2-AS1-001) 52577485-52579527 lincRNA
ENST00000605910 (TRAM2-AS1-004) 52578366-52583559 lincRNA
ENST00000606558 (TRAM2-AS1-002) 52578146-52582932 lincRNA
ENST00000606714 (TRAM2-AS1-003) 52577307-52583993 lincRNA
ENSG00000270382 (RP1-152L7.9)
ENST00000605188 (RP1-152L7.9-001) 52657373-52657651 processed_pseudogene
CIL_0005N6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041779-ENSMUSG00000025933 CGP 10090 1:20996299-21230167
GeneTranscriptPositionBiotype
ENSMUSG00000025933 (Tmem14a)
transmembrane protein 14A
ENSMUST00000027064 (Tmem14a-002) 21218662-21230164 protein_coding
ENSMUST00000027065 (Tmem14a-001) 21218575-21230167 protein_coding
ENSMUSG00000041779 (Tram2)
translocating chain-associating membrane protein 2
ENSMUST00000037998 (Tram2-001) 20996299-21079229 protein_coding
ENSMUST00000187210 (Tram2-002) 21004313-21043656 processed_transcript
ENSMUSG00000099971 (RP24-278K16.1)
predicted gene 28287
ENSMUST00000186612 (RP24-278K16.1-001) 21080114-21081748 antisense
ENSMUSG00000100819 (RP23-80N7.1)
predicted gene 2693
ENSMUST00000189119 (RP23-80N7.1-001) 21178988-21187427 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005N6_0001ENSG00000065308ENST00000182527ENSG00000096092ENST00000211314ENSG00000216775ENST00000406724ENST00000602367ENSG00000225791ENST00000453216ENST00000605910ENST00000606558ENST00000606714ENSG00000270382ENST00000605188CIL_0005N6_0002ENSMUSG00000025933ENSMUST00000027064ENSMUST00000027065ENSMUSG00000041779ENSMUST00000037998ENSMUST00000187210ENSMUSG00000099971ENSMUST00000186612ENSMUSG00000100819ENSMUST00000189119
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005N6_0001ENSG00000065308ENST00000182527ENSG00000096092ENST00000211314ENSG00000216775ENST00000406724ENST00000602367ENSG00000225791ENST00000453216ENST00000605910ENST00000606558ENST00000606714ENSG00000270382ENST00000605188CIL_0005N6_0002ENSMUSG00000025933ENSMUST00000027064ENSMUST00000027065ENSMUSG00000041779ENSMUST00000037998ENSMUSG00000099971ENSMUST00000186612ENSMUSG00000100819ENSMUST00000189119
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065308 ENST00000182527 14.215±0.00 7.864±0.00 1.724±0.00 0.714±0.34 7.101±0.78 5.929±1.86 1.808±0.97 3.346±1.23 6.747±2.56 3.522±0.96 0.878±0.33 5.085±1.87 14.703±1.80 10.458±0.13
ENSG00000096092 ENST00000211314 3.537±0.00 5.231±0.00 2.967±0.00 21.467±1.06 4.041±0.91 6.962±2.84 2.075±0.93 7.748±4.36 6.175±2.09 4.848±0.27 0.813±0.00 10.786±4.89 8.024±1.62 10.085±4.18
ENSG00000216775 ENST00000406724 0.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602367 N/A N/A N/A 0.219±0.03 0.930±0.00 0.269±0.00 0.038±0.00 0.240±0.00 0.575±0.44 0.466±0.01 N/A 0.275±0.01 0.905±0.22 0.591±0.00
ENSG00000225791 ENST00000453216 N/A N/A N/A N/A 1.335±0.00 N/A N/A 1.613±0.00 N/A N/A N/A 0.857±0.00 0.753±0.00 1.088±0.00
ENST00000605910 N/A 0.779±0.00 0.181±0.00 0.931±0.02 N/A N/A 0.313±0.00 1.220±0.00 0.987±0.00 1.121±0.00 0.412±0.30 0.742±0.43 1.553±0.08 N/A
ENST00000606558 N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A N/A 0.884±0.03 1.106±0.00 N/A N/A N/A
ENST00000606714 0.807±0.00 0.963±0.00 0.342±0.00 0.916±0.38 0.629±0.19 0.609±0.52 0.815±0.61 0.621±0.33 0.900±0.27 0.653±0.17 0.172±0.04 0.340±0.24 0.614±0.44 1.067±0.50
ENSG00000270382 ENST00000605188 N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025933 ENSMUST00000027064 1.399±0.39 1.316±0.65 1.553±0.44 1.344±0.71 1.106±0.26 1.105±0.20 0.432±0.18 1.390±0.24 0.621±0.17 1.541±0.28 0.233±0.08 1.445±0.71 0.559±0.31 0.114±0.02
ENSMUST00000027065 3.899±0.70 2.938±1.15 10.019±1.67 4.739±1.50 1.988±0.54 1.049±0.49 1.537±0.35 3.472±0.34 1.987±0.41 2.187±0.29 0.726±0.13 3.426±0.93 1.036±0.78 0.309±0.19
ENSMUSG00000041779 ENSMUST00000037998 6.747±1.19 1.164±0.13 4.181±0.15 1.461±0.00 4.700±0.55 3.470±0.71 1.870±0.09 1.942±0.22 2.166±0.82 5.539±0.29 0.587±0.09 11.088±3.77 8.779±4.71 3.624±1.83
ENSMUST00000187210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099971 ENSMUST00000186612 N/A N/A 0.020±0.00 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 0.119±0.11 N/A
ENSMUSG00000100819 ENSMUST00000189119 N/A 0.228±0.00 0.035±0.00 0.292±0.00 N/A N/A 0.160±0.08 0.245±0.16 0.136±0.01 N/A 0.080±0.00 0.199±0.01 0.023±0.01 N/A

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